(28 nodes) RAB geranylgeranylation, and HOPS complex network (Chaetomium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_10811	Uncharacterized protein. (193 aa)
	CHGG_10507	E3 ubiquitin-protein ligase PEP5. (971 aa)
	CHGG_07989	CNH domain-containing protein. (973 aa)
	CHGG_07842	GTP-binding protein ypt1. (203 aa)
	CHGG_07293	CNH domain-containing protein. (1249 aa)
	CHGG_07204	Rab-GAP TBC domain-containing protein. (852 aa)
	CHGG_05232	Uncharacterized protein. (677 aa)
	CHGG_04815	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (467 aa)
	CHGG_04768	Uncharacterized protein. (216 aa)
	CHGG_04742	Uncharacterized protein. (206 aa)
	CHGG_04444	Uncharacterized protein. (701 aa)
	CHGG_03781	Uncharacterized protein. (153 aa)
	CHGG_06298	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family. (491 aa)
	CHGG_05685	VPS9 domain-containing protein. (799 aa)
	CHGG_05673	Uncharacterized protein. (204 aa)
	CHGG_03272	Pep3_Vps18 domain-containing protein. (966 aa)
	CHGG_03091	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology. (834 aa)
	CHGG_02872	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (584 aa)
	CHGG_02550	Uncharacterized protein. (205 aa)
	CHGG_02355	Uncharacterized protein. (1237 aa)
	CHGG_01959	Uncharacterized protein. (201 aa)
	CHGG_01618	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (669 aa)
	CHGG_01371	Uncharacterized protein. (1771 aa)
	CHGG_01176	Uncharacterized protein. (423 aa)
	CHGG_01072	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (327 aa)
	CHGG_01071	Uncharacterized protein. (463 aa)
	MON1	Vacuolar fusion protein MON1; Required for multiple vacuole delivery pathways including the cytoplasm to vacuole transport (Cvt), autophagy, pexophagy and endocytosis; Belongs to the MON1/SAND family. (656 aa)
	CHGG_00524	Uncharacterized protein. (839 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00524	CHGG_01176	Q2HGY0	Q2HF28	Uncharacterized protein.	Uncharacterized protein.	0.768
CHGG_00524	CHGG_01371	Q2HGY0	Q2HEI3	Uncharacterized protein.	Uncharacterized protein.	0.584
CHGG_00524	CHGG_01618	Q2HGY0	Q2HDT6	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.977
CHGG_00524	CHGG_02355	Q2HGY0	Q2HBP9	Uncharacterized protein.	Uncharacterized protein.	0.972
CHGG_00524	CHGG_02550	Q2HGY0	Q2HB54	Uncharacterized protein.	Uncharacterized protein.	0.933
CHGG_00524	CHGG_02872	Q2HGY0	Q2HA82	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.450
CHGG_00524	CHGG_03091	Q2HGY0	Q2H9L3	Uncharacterized protein.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.916
CHGG_00524	CHGG_03272	Q2HGY0	Q2H932	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.977
CHGG_00524	CHGG_04742	Q2HGY0	Q2H0F4	Uncharacterized protein.	Uncharacterized protein.	0.749
CHGG_00524	CHGG_04815	Q2HGY0	Q2H081	Uncharacterized protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.791
CHGG_00524	CHGG_06298	Q2HGY0	Q2H4W7	Uncharacterized protein.	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.	0.684
CHGG_00524	CHGG_07204	Q2HGY0	Q2GXV0	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.426
CHGG_00524	CHGG_07293	Q2HGY0	Q2GXL1	Uncharacterized protein.	CNH domain-containing protein.	0.798
CHGG_00524	CHGG_07989	Q2HGY0	Q2GVL5	Uncharacterized protein.	CNH domain-containing protein.	0.977
CHGG_00524	CHGG_10507	Q2HGY0	Q2GNE7	Uncharacterized protein.	E3 ubiquitin-protein ligase PEP5.	0.977
CHGG_00524	CHGG_10811	Q2HGY0	Q2GMJ3	Uncharacterized protein.	Uncharacterized protein.	0.916
CHGG_00524	MON1	Q2HGY0	Q2HFQ4	Uncharacterized protein.	Vacuolar fusion protein MON1; Required for multiple vacuole delivery pathways including the cytoplasm to vacuole transport (Cvt), autophagy, pexophagy and endocytosis; Belongs to the MON1/SAND family.	0.999
CHGG_01071	CHGG_01959	Q2HFD3	Q2HCU5	Uncharacterized protein.	Uncharacterized protein.	0.460
CHGG_01071	CHGG_02550	Q2HFD3	Q2HB54	Uncharacterized protein.	Uncharacterized protein.	0.719
CHGG_01071	CHGG_03781	Q2HFD3	Q2H365	Uncharacterized protein.	Uncharacterized protein.	0.642