(10 nodes) Regulation of ion transmembrane transport, and VASt domain network (Chaetomium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_09940	Uncharacterized protein. (275 aa)
	CHGG_08694	C2H2-type domain-containing protein. (380 aa)
	CHGG_07603	Uncharacterized protein. (571 aa)
	CHGG_03891	VASt domain-containing protein. (1113 aa)
	CHGG_06654	Uncharacterized protein. (414 aa)
	CHGG_06413	Uncharacterized protein. (537 aa)
	CHGG_03363	Uncharacterized protein. (242 aa)
	CHGG_02993	Uncharacterized protein. (272 aa)
	CHGG_00928	MYND-type domain-containing protein. (784 aa)
	CHGG_00605	Mcp5_PH domain-containing protein. (1353 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00605	CHGG_03891	Q2HGP9	Q2H2V5	Mcp5_PH domain-containing protein.	VASt domain-containing protein.	0.613
CHGG_00605	CHGG_09940	Q2HGP9	Q2GQ14	Mcp5_PH domain-containing protein.	Uncharacterized protein.	0.409
CHGG_00928	CHGG_03891	Q2HFS6	Q2H2V5	MYND-type domain-containing protein.	VASt domain-containing protein.	0.613
CHGG_00928	CHGG_09940	Q2HFS6	Q2GQ14	MYND-type domain-containing protein.	Uncharacterized protein.	0.409
CHGG_03363	CHGG_03891	Q2H8U1	Q2H2V5	Uncharacterized protein.	VASt domain-containing protein.	0.613
CHGG_03363	CHGG_09940	Q2H8U1	Q2GQ14	Uncharacterized protein.	Uncharacterized protein.	0.409
CHGG_03891	CHGG_00605	Q2H2V5	Q2HGP9	VASt domain-containing protein.	Mcp5_PH domain-containing protein.	0.613
CHGG_03891	CHGG_00928	Q2H2V5	Q2HFS6	VASt domain-containing protein.	MYND-type domain-containing protein.	0.613
CHGG_03891	CHGG_03363	Q2H2V5	Q2H8U1	VASt domain-containing protein.	Uncharacterized protein.	0.613
CHGG_03891	CHGG_06413	Q2H2V5	Q2H4K2	VASt domain-containing protein.	Uncharacterized protein.	0.613
CHGG_03891	CHGG_07603	Q2H2V5	Q2GWQ1	VASt domain-containing protein.	Uncharacterized protein.	0.613
CHGG_06413	CHGG_03891	Q2H4K2	Q2H2V5	Uncharacterized protein.	VASt domain-containing protein.	0.613
CHGG_06413	CHGG_09940	Q2H4K2	Q2GQ14	Uncharacterized protein.	Uncharacterized protein.	0.409
CHGG_07603	CHGG_03891	Q2GWQ1	Q2H2V5	Uncharacterized protein.	VASt domain-containing protein.	0.613
CHGG_07603	CHGG_09940	Q2GWQ1	Q2GQ14	Uncharacterized protein.	Uncharacterized protein.	0.409
CHGG_09940	CHGG_00605	Q2GQ14	Q2HGP9	Uncharacterized protein.	Mcp5_PH domain-containing protein.	0.409
CHGG_09940	CHGG_00928	Q2GQ14	Q2HFS6	Uncharacterized protein.	MYND-type domain-containing protein.	0.409
CHGG_09940	CHGG_03363	Q2GQ14	Q2H8U1	Uncharacterized protein.	Uncharacterized protein.	0.409
CHGG_09940	CHGG_06413	Q2GQ14	Q2H4K2	Uncharacterized protein.	Uncharacterized protein.	0.409
CHGG_09940	CHGG_07603	Q2GQ14	Q2GWQ1	Uncharacterized protein.	Uncharacterized protein.	0.409