9 items (Chaetomium globosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_05724	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (412 aa)
	CHGG_00469	Lipoyl-binding domain-containing protein. (425 aa)
	CHGG_00985	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1141 aa)
	CHGG_06142	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (378 aa)
	CHGG_07221	Uncharacterized protein. (336 aa)
	CHGG_00017	Isochorismatase domain-containing protein. (192 aa)
	CHGG_08846	Uncharacterized protein. (302 aa)
	CHGG_10314	ACT domain-containing protein. (320 aa)
	CHGG_10260	Transket_pyr domain-containing protein. (1041 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00017	CHGG_05724	Q2HID7	Q2H6J1	Isochorismatase domain-containing protein.	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.750
CHGG_00017	CHGG_06142	Q2HID7	Q2H5C3	Isochorismatase domain-containing protein.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.902
CHGG_00017	CHGG_10260	Q2HID7	Q2GP44	Isochorismatase domain-containing protein.	Transket_pyr domain-containing protein.	0.990
CHGG_00469	CHGG_05724	Q2HH35	Q2H6J1	Lipoyl-binding domain-containing protein.	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.794
CHGG_00469	CHGG_06142	Q2HH35	Q2H5C3	Lipoyl-binding domain-containing protein.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.919
CHGG_00469	CHGG_10260	Q2HH35	Q2GP44	Lipoyl-binding domain-containing protein.	Transket_pyr domain-containing protein.	0.999
CHGG_05724	CHGG_00017	Q2H6J1	Q2HID7	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Isochorismatase domain-containing protein.	0.750
CHGG_05724	CHGG_00469	Q2H6J1	Q2HH35	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Lipoyl-binding domain-containing protein.	0.794
CHGG_05724	CHGG_06142	Q2H6J1	Q2H5C3	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.999
CHGG_05724	CHGG_10260	Q2H6J1	Q2GP44	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Transket_pyr domain-containing protein.	0.891
CHGG_05724	CHGG_10314	Q2H6J1	Q2GNZ0	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	ACT domain-containing protein.	0.808
CHGG_06142	CHGG_00017	Q2H5C3	Q2HID7	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Isochorismatase domain-containing protein.	0.902
CHGG_06142	CHGG_00469	Q2H5C3	Q2HH35	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Lipoyl-binding domain-containing protein.	0.919
CHGG_06142	CHGG_05724	Q2H5C3	Q2H6J1	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.999
CHGG_06142	CHGG_10260	Q2H5C3	Q2GP44	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Transket_pyr domain-containing protein.	0.889
CHGG_06142	CHGG_10314	Q2H5C3	Q2GNZ0	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	ACT domain-containing protein.	0.860
CHGG_07221	CHGG_10314	Q2GXT3	Q2GNZ0	Uncharacterized protein.	ACT domain-containing protein.	0.933
CHGG_10260	CHGG_00017	Q2GP44	Q2HID7	Transket_pyr domain-containing protein.	Isochorismatase domain-containing protein.	0.990
CHGG_10260	CHGG_00469	Q2GP44	Q2HH35	Transket_pyr domain-containing protein.	Lipoyl-binding domain-containing protein.	0.999
CHGG_10260	CHGG_05724	Q2GP44	Q2H6J1	Transket_pyr domain-containing protein.	Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.891