(6 nodes) PAS complex network (Chaetomium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_00379	Uncharacterized protein. (283 aa)
	CHGG_01680	Uncharacterized protein. (2422 aa)
	CHGG_04574	SAC domain-containing protein. (1138 aa)
	CHGG_06976	Uncharacterized protein. (964 aa)
	CHGG_00424	Uncharacterized protein. (899 aa)
	CHGG_00380	Rad54_N domain-containing protein. (258 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00379	CHGG_00380	Q2HHC5	Q2HHC4	Uncharacterized protein.	Rad54_N domain-containing protein.	0.900
CHGG_00379	CHGG_00424	Q2HHC5	Q2HH80	Uncharacterized protein.	Uncharacterized protein.	0.545
CHGG_00380	CHGG_00379	Q2HHC4	Q2HHC5	Rad54_N domain-containing protein.	Uncharacterized protein.	0.900
CHGG_00380	CHGG_00424	Q2HHC4	Q2HH80	Rad54_N domain-containing protein.	Uncharacterized protein.	0.744
CHGG_00424	CHGG_00379	Q2HH80	Q2HHC5	Uncharacterized protein.	Uncharacterized protein.	0.545
CHGG_00424	CHGG_00380	Q2HH80	Q2HHC4	Uncharacterized protein.	Rad54_N domain-containing protein.	0.744
CHGG_00424	CHGG_01680	Q2HH80	Q2HDM4	Uncharacterized protein.	Uncharacterized protein.	0.986
CHGG_00424	CHGG_04574	Q2HH80	Q2H0X2	Uncharacterized protein.	SAC domain-containing protein.	0.984
CHGG_00424	CHGG_06976	Q2HH80	Q2GYH8	Uncharacterized protein.	Uncharacterized protein.	0.610
CHGG_01680	CHGG_00424	Q2HDM4	Q2HH80	Uncharacterized protein.	Uncharacterized protein.	0.986
CHGG_01680	CHGG_04574	Q2HDM4	Q2H0X2	Uncharacterized protein.	SAC domain-containing protein.	0.998
CHGG_01680	CHGG_06976	Q2HDM4	Q2GYH8	Uncharacterized protein.	Uncharacterized protein.	0.642
CHGG_04574	CHGG_00424	Q2H0X2	Q2HH80	SAC domain-containing protein.	Uncharacterized protein.	0.984
CHGG_04574	CHGG_01680	Q2H0X2	Q2HDM4	SAC domain-containing protein.	Uncharacterized protein.	0.998
CHGG_04574	CHGG_06976	Q2H0X2	Q2GYH8	SAC domain-containing protein.	Uncharacterized protein.	0.616
CHGG_06976	CHGG_00424	Q2GYH8	Q2HH80	Uncharacterized protein.	Uncharacterized protein.	0.610
CHGG_06976	CHGG_01680	Q2GYH8	Q2HDM4	Uncharacterized protein.	Uncharacterized protein.	0.642
CHGG_06976	CHGG_04574	Q2GYH8	Q2H0X2	Uncharacterized protein.	SAC domain-containing protein.	0.616