(38 nodes) F-box domain network (Chaetomium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_00964	Uncharacterized protein. (461 aa)
	CHGG_00888	F-box domain-containing protein. (522 aa)
	CHGG_00744	F-box domain-containing protein. (1378 aa)
	CHGG_00736	F-box domain-containing protein. (520 aa)
	CHGG_00551	F-box domain-containing protein. (658 aa)
	CHGG_00403	F-box domain-containing protein. (626 aa)
	CHGG_04251	F-box domain-containing protein. (617 aa)
	CHGG_06054	F-box domain-containing protein. (490 aa)
	CHGG_05817	F-box domain-containing protein. (531 aa)
	CHGG_05725	Uncharacterized protein. (656 aa)
	CHGG_05636	F-box domain-containing protein. (989 aa)
	CHGG_03506	Uncharacterized protein. (644 aa)
	CHGG_03477	Uncharacterized protein. (779 aa)
	CHGG_03408	F-box domain-containing protein. (448 aa)
	CHGG_02023	Uncharacterized protein. (1141 aa)
	CHGG_01783	F-box domain-containing protein. (681 aa)
	CHGG_01564	F-box domain-containing protein. (621 aa)
	CHGG_01480	F-box domain-containing protein. (1172 aa)
	CHGG_00961	F-box domain-containing protein. (1757 aa)
	CHGG_08256	F-box domain-containing protein. (361 aa)
	CHGG_08316	F-box domain-containing protein. (318 aa)
	CHGG_08461	F-box domain-containing protein. (484 aa)
	CHGG_08482	Uncharacterized protein. (1198 aa)
	CHGG_08937	F-box domain-containing protein. (656 aa)
	CHGG_09386	Uncharacterized protein. (956 aa)
	CHGG_09415	Uncharacterized protein. (1018 aa)
	CHGG_09506	Uncharacterized protein. (642 aa)
	CHGG_09974	ANK_REP_REGION domain-containing protein. (852 aa)
	CHGG_10696	F-box domain-containing protein. (782 aa)
	CHGG_10902	F-box domain-containing protein. (624 aa)
	CHGG_08041	F-box domain-containing protein. (456 aa)
	CHGG_07977	F-box domain-containing protein. (298 aa)
	CHGG_07487	F-box domain-containing protein. (494 aa)
	CHGG_07437	F-box domain-containing protein. (772 aa)
	CHGG_07211	F-box domain-containing protein. (970 aa)
	CHGG_04891	F-box domain-containing protein. (1005 aa)
	CHGG_04867	F-box domain-containing protein. (659 aa)
	CHGG_04396	F-box domain-containing protein. (329 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_02023	CHGG_03506	Q2HCN1	Q2H8E8	Uncharacterized protein.	Uncharacterized protein.	0.628
CHGG_02023	CHGG_05725	Q2HCN1	Q2H6J0	Uncharacterized protein.	Uncharacterized protein.	0.444
CHGG_02023	CHGG_09415	Q2HCN1	Q2GRI9	Uncharacterized protein.	Uncharacterized protein.	0.444
CHGG_03477	CHGG_03506	Q2H8H7	Q2H8E8	Uncharacterized protein.	Uncharacterized protein.	0.638
CHGG_03477	CHGG_05725	Q2H8H7	Q2H6J0	Uncharacterized protein.	Uncharacterized protein.	0.649
CHGG_03477	CHGG_07437	Q2H8H7	Q2GX67	Uncharacterized protein.	F-box domain-containing protein.	0.548
CHGG_03477	CHGG_09415	Q2H8H7	Q2GRI9	Uncharacterized protein.	Uncharacterized protein.	0.664
CHGG_03506	CHGG_02023	Q2H8E8	Q2HCN1	Uncharacterized protein.	Uncharacterized protein.	0.628
CHGG_03506	CHGG_03477	Q2H8E8	Q2H8H7	Uncharacterized protein.	Uncharacterized protein.	0.638
CHGG_03506	CHGG_05725	Q2H8E8	Q2H6J0	Uncharacterized protein.	Uncharacterized protein.	0.837
CHGG_03506	CHGG_07437	Q2H8E8	Q2GX67	Uncharacterized protein.	F-box domain-containing protein.	0.878
CHGG_03506	CHGG_09415	Q2H8E8	Q2GRI9	Uncharacterized protein.	Uncharacterized protein.	0.844
CHGG_05725	CHGG_02023	Q2H6J0	Q2HCN1	Uncharacterized protein.	Uncharacterized protein.	0.444
CHGG_05725	CHGG_03477	Q2H6J0	Q2H8H7	Uncharacterized protein.	Uncharacterized protein.	0.649
CHGG_05725	CHGG_03506	Q2H6J0	Q2H8E8	Uncharacterized protein.	Uncharacterized protein.	0.837
CHGG_05725	CHGG_07437	Q2H6J0	Q2GX67	Uncharacterized protein.	F-box domain-containing protein.	0.856
CHGG_05725	CHGG_09415	Q2H6J0	Q2GRI9	Uncharacterized protein.	Uncharacterized protein.	0.820
CHGG_07437	CHGG_03477	Q2GX67	Q2H8H7	F-box domain-containing protein.	Uncharacterized protein.	0.548
CHGG_07437	CHGG_03506	Q2GX67	Q2H8E8	F-box domain-containing protein.	Uncharacterized protein.	0.878
CHGG_07437	CHGG_05725	Q2GX67	Q2H6J0	F-box domain-containing protein.	Uncharacterized protein.	0.856