(6 nodes) Snf7 family network (Chaetomium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_07869	Uncharacterized protein. (241 aa)
	CHGG_10146	Uncharacterized protein. (217 aa)
	CHGG_07926	Uncharacterized protein. (130 aa)
	CHGG_06694	Uncharacterized protein. (207 aa)
	CHGG_03111	Uncharacterized protein. (227 aa)
	CHGG_02689	Uncharacterized protein. (224 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_02689	CHGG_03111	Q2HAR5	Q2H9J3	Uncharacterized protein.	Uncharacterized protein.	0.997
CHGG_02689	CHGG_06694	Q2HAR5	Q2H3S1	Uncharacterized protein.	Uncharacterized protein.	0.991
CHGG_02689	CHGG_07869	Q2HAR5	Q2GVY5	Uncharacterized protein.	Uncharacterized protein.	0.998
CHGG_02689	CHGG_07926	Q2HAR5	Q2GVS8	Uncharacterized protein.	Uncharacterized protein.	0.996
CHGG_02689	CHGG_10146	Q2HAR5	Q2GPF8	Uncharacterized protein.	Uncharacterized protein.	0.991
CHGG_03111	CHGG_02689	Q2H9J3	Q2HAR5	Uncharacterized protein.	Uncharacterized protein.	0.997
CHGG_03111	CHGG_06694	Q2H9J3	Q2H3S1	Uncharacterized protein.	Uncharacterized protein.	0.998
CHGG_03111	CHGG_07869	Q2H9J3	Q2GVY5	Uncharacterized protein.	Uncharacterized protein.	0.998
CHGG_03111	CHGG_07926	Q2H9J3	Q2GVS8	Uncharacterized protein.	Uncharacterized protein.	0.988
CHGG_03111	CHGG_10146	Q2H9J3	Q2GPF8	Uncharacterized protein.	Uncharacterized protein.	0.988
CHGG_06694	CHGG_02689	Q2H3S1	Q2HAR5	Uncharacterized protein.	Uncharacterized protein.	0.991
CHGG_06694	CHGG_03111	Q2H3S1	Q2H9J3	Uncharacterized protein.	Uncharacterized protein.	0.998
CHGG_06694	CHGG_07869	Q2H3S1	Q2GVY5	Uncharacterized protein.	Uncharacterized protein.	0.991
CHGG_06694	CHGG_07926	Q2H3S1	Q2GVS8	Uncharacterized protein.	Uncharacterized protein.	0.938
CHGG_06694	CHGG_10146	Q2H3S1	Q2GPF8	Uncharacterized protein.	Uncharacterized protein.	0.991
CHGG_07869	CHGG_02689	Q2GVY5	Q2HAR5	Uncharacterized protein.	Uncharacterized protein.	0.998
CHGG_07869	CHGG_03111	Q2GVY5	Q2H9J3	Uncharacterized protein.	Uncharacterized protein.	0.998
CHGG_07869	CHGG_06694	Q2GVY5	Q2H3S1	Uncharacterized protein.	Uncharacterized protein.	0.991
CHGG_07869	CHGG_07926	Q2GVY5	Q2GVS8	Uncharacterized protein.	Uncharacterized protein.	0.988
CHGG_07869	CHGG_10146	Q2GVY5	Q2GPF8	Uncharacterized protein.	Uncharacterized protein.	0.969