18 items (Chaetomium globosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_09001	Rieske domain-containing protein. (1103 aa)
	CHGG_04547	Pyr_redox_2 domain-containing protein. (438 aa)
	CHGG_07814	Pyr_redox_2 domain-containing protein. (409 aa)
	CHGG_01790	PKS_ER domain-containing protein. (582 aa)
	CHGG_03887	Pyr_redox_2 domain-containing protein. (380 aa)
	CHGG_03788	EF-hand domain-containing protein. (656 aa)
	CHGG_03027	Pyr_redox_2 domain-containing protein. (580 aa)
	CHGG_10904	Pyr_redox_2 domain-containing protein. (469 aa)
	CHGG_08086	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (429 aa)
	CHGG_02921	Pyr_redox_2 domain-containing protein. (516 aa)
	CHGG_10374	Glutamine amidotransferase type-2 domain-containing protein. (1996 aa)
	CHGG_10743	Pyr_redox_2 domain-containing protein. (335 aa)
	CHGG_10832	Pyr_redox_2 domain-containing protein. (418 aa)
	CHGG_00138	Uncharacterized protein. (471 aa)
	CHGG_00427	Dihydrolipoyl dehydrogenase. (498 aa)
	CHGG_00279	Pyr_redox_2 domain-containing protein. (454 aa)
	CHGG_08332	Pyr_redox_2 domain-containing protein. (394 aa)
	CHGG_08337	Uncharacterized protein. (1042 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00138	CHGG_01790	Q2HI16	Q2HDB4	Uncharacterized protein.	PKS_ER domain-containing protein.	0.698
CHGG_00138	CHGG_04547	Q2HI16	Q2H0Z9	Uncharacterized protein.	Pyr_redox_2 domain-containing protein.	0.410
CHGG_00138	CHGG_10374	Q2HI16	Q2GNT0	Uncharacterized protein.	Glutamine amidotransferase type-2 domain-containing protein.	0.636
CHGG_00279	CHGG_08086	Q2HHM5	Q2GVB8	Pyr_redox_2 domain-containing protein.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.420
CHGG_00427	CHGG_01790	Q2HH77	Q2HDB4	Dihydrolipoyl dehydrogenase.	PKS_ER domain-containing protein.	0.698
CHGG_00427	CHGG_04547	Q2HH77	Q2H0Z9	Dihydrolipoyl dehydrogenase.	Pyr_redox_2 domain-containing protein.	0.410
CHGG_00427	CHGG_10374	Q2HH77	Q2GNT0	Dihydrolipoyl dehydrogenase.	Glutamine amidotransferase type-2 domain-containing protein.	0.636
CHGG_01790	CHGG_00138	Q2HDB4	Q2HI16	PKS_ER domain-containing protein.	Uncharacterized protein.	0.698
CHGG_01790	CHGG_00427	Q2HDB4	Q2HH77	PKS_ER domain-containing protein.	Dihydrolipoyl dehydrogenase.	0.698
CHGG_01790	CHGG_02921	Q2HDB4	Q2HA33	PKS_ER domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.461
CHGG_01790	CHGG_03027	Q2HDB4	Q2H9S7	PKS_ER domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.461
CHGG_01790	CHGG_03788	Q2HDB4	Q2H358	PKS_ER domain-containing protein.	EF-hand domain-containing protein.	0.461
CHGG_01790	CHGG_04547	Q2HDB4	Q2H0Z9	PKS_ER domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.861
CHGG_01790	CHGG_08086	Q2HDB4	Q2GVB8	PKS_ER domain-containing protein.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.835
CHGG_01790	CHGG_10374	Q2HDB4	Q2GNT0	PKS_ER domain-containing protein.	Glutamine amidotransferase type-2 domain-containing protein.	0.727
CHGG_01790	CHGG_10832	Q2HDB4	Q2GMH2	PKS_ER domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.461
CHGG_02921	CHGG_01790	Q2HA33	Q2HDB4	Pyr_redox_2 domain-containing protein.	PKS_ER domain-containing protein.	0.461
CHGG_03027	CHGG_01790	Q2H9S7	Q2HDB4	Pyr_redox_2 domain-containing protein.	PKS_ER domain-containing protein.	0.461
CHGG_03788	CHGG_01790	Q2H358	Q2HDB4	EF-hand domain-containing protein.	PKS_ER domain-containing protein.	0.461
CHGG_03887	CHGG_08086	Q2H2V9	Q2GVB8	Pyr_redox_2 domain-containing protein.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.440