(36 nodes) RNA polymerase network (Chaetomium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHGG_10689	Uncharacterized protein. (354 aa)
	CHGG_10537	DPH-type MB domain-containing protein. (85 aa)
	CHGG_10417	RPOLD domain-containing protein. (338 aa)
	CHGG_10294	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1475 aa)
	CHGG_09412	TFIIS central domain-containing protein. (938 aa)
	CHGG_08628	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1290 aa)
	CHGG_08507	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1182 aa)
	RPC82	DNA-directed RNA polymerase III subunit RPC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs (By similarity). (628 aa)
	CHGG_08101	Uncharacterized protein. (572 aa)
	CHGG_07850	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1155 aa)
	CHGG_07324	Endo/exonuclease/phosphatase domain-containing protein. (261 aa)
	CHGG_06842	Uncharacterized protein. (497 aa)
	CHGG_05129	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (290 aa)
	CHGG_04870	SAP30_Sin3_bdg domain-containing protein. (185 aa)
	CHGG_04858	Uncharacterized protein. (220 aa)
	CHGG_04775	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (139 aa)
	CHGG_04583	Uncharacterized protein. (116 aa)
	CHGG_04292	Uncharacterized protein. (81 aa)
	CHGG_04242	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (483 aa)
	CHGG_04126	Uncharacterized protein. (132 aa)
	CHGG_04125	Uncharacterized protein. (271 aa)
	CHGG_06194	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (111 aa)
	CHGG_05749	Uncharacterized protein. (160 aa)
	CHGG_05733	Uncharacterized protein. (444 aa)
	CHGG_03293	RNA_pol_L_2 domain-containing protein. (155 aa)
	CHGG_02847	Uncharacterized protein. (202 aa)
	CHGG_02738	RPOL4c domain-containing protein. (146 aa)
	CHGG_02680	Uncharacterized protein. (546 aa)
	CHGG_02521	RBR-type E3 ubiquitin transferase. (614 aa)
	CHGG_01704	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1756 aa)
	CHGG_01701	Uncharacterized protein. (82 aa)
	CHGG_01559	Uncharacterized protein. (580 aa)
	CHGG_01433	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1188 aa)
	CHGG_01303	Uncharacterized protein. (430 aa)
	CHGG_01093	RPOLD domain-containing protein. (374 aa)
	CHGG_00899	Uncharacterized protein. (307 aa)

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00899	CHGG_01093	Q2HFV5	Q2HFB1	Uncharacterized protein.	RPOLD domain-containing protein.	0.810
CHGG_00899	CHGG_01303	Q2HFV5	Q2HEQ1	Uncharacterized protein.	Uncharacterized protein.	0.862
CHGG_00899	CHGG_01433	Q2HFV5	Q2HEC1	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.615
CHGG_00899	CHGG_01559	Q2HFV5	Q2HDZ5	Uncharacterized protein.	Uncharacterized protein.	0.929
CHGG_00899	CHGG_01701	Q2HFV5	Q2HDK3	Uncharacterized protein.	Uncharacterized protein.	0.983
CHGG_00899	CHGG_01704	Q2HFV5	Q2HDK0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
CHGG_00899	CHGG_02680	Q2HFV5	Q2HAS4	Uncharacterized protein.	Uncharacterized protein.	0.888
CHGG_00899	CHGG_02738	Q2HFV5	Q2HAL6	Uncharacterized protein.	RPOL4c domain-containing protein.	0.993
CHGG_00899	CHGG_02847	Q2HFV5	Q2HAA7	Uncharacterized protein.	Uncharacterized protein.	0.980
CHGG_00899	CHGG_03293	Q2HFV5	Q2H911	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.924
CHGG_00899	CHGG_04125	Q2HFV5	Q2H271	Uncharacterized protein.	Uncharacterized protein.	0.697
CHGG_00899	CHGG_04126	Q2HFV5	Q2H270	Uncharacterized protein.	Uncharacterized protein.	0.697
CHGG_00899	CHGG_04292	Q2HFV5	Q2H1Q4	Uncharacterized protein.	Uncharacterized protein.	0.991
CHGG_00899	CHGG_04583	Q2HFV5	Q2H0W3	Uncharacterized protein.	Uncharacterized protein.	0.980
CHGG_00899	CHGG_04775	Q2HFV5	Q2H0C1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.567
CHGG_00899	CHGG_04858	Q2HFV5	Q2H038	Uncharacterized protein.	Uncharacterized protein.	0.995
CHGG_00899	CHGG_04870	Q2HFV5	Q2H026	Uncharacterized protein.	SAP30_Sin3_bdg domain-containing protein.	0.465
CHGG_00899	CHGG_05129	Q2HFV5	Q2GZB7	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.756
CHGG_00899	CHGG_05733	Q2HFV5	Q2H6I2	Uncharacterized protein.	Uncharacterized protein.	0.886
CHGG_00899	CHGG_05749	Q2HFV5	Q2H6G6	Uncharacterized protein.	Uncharacterized protein.	0.986