(15 nodes) Mitotic chromosome condensation, and Cohesin complex network (Clavispora lusitaniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLUG_00439	Rad21_Rec8_N domain-containing protein. (502 aa)
	CLUG_00834	Peptidase C50 domain-containing protein. (1622 aa)
	CLUG_00872	Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. (728 aa)
	CLUG_01739	SCD domain-containing protein. (1045 aa)
	CLUG_02672	Cnd3 domain-containing protein. (1158 aa)
	CLUG_03080	Structural maintenance of chromosomes protein. (1170 aa)
	CLUG_02337	Structural maintenance of chromosomes protein. (1190 aa)
	CLUG_02401	Structural maintenance of chromosomes protein. (1193 aa)
	CLUG_03412	Structural maintenance of chromosomes protein. (1419 aa)
	CLUG_03478	Uncharacterized protein. (519 aa)
	CLUG_03580	Sister chromatid cohesion protein. (1525 aa)
	CLUG_04620	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1163 aa)
	CLUG_04636	Uncharacterized protein. (745 aa)
	CLUG_04637	Uncharacterized protein. (569 aa)
	CLUG_05879	N-acetyltransferase domain-containing protein. (233 aa)

Your Current Organism:

Clavispora lusitaniae

NCBI taxonomy Id: 306902
Other names: C. lusitaniae ATCC 42720, Candida lusitaniae ATCC 42720, Clavispora lusitaniae ATCC 42720

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLUG_00439	CLUG_00834	C4XWW0	C4XY11	Rad21_Rec8_N domain-containing protein.	Peptidase C50 domain-containing protein.	0.982
CLUG_00439	CLUG_01739	C4XWW0	C4Y0K7	Rad21_Rec8_N domain-containing protein.	SCD domain-containing protein.	0.991
CLUG_00439	CLUG_02337	C4XWW0	C4Y3W5	Rad21_Rec8_N domain-containing protein.	Structural maintenance of chromosomes protein.	0.991
CLUG_00439	CLUG_02401	C4XWW0	C4Y429	Rad21_Rec8_N domain-containing protein.	Structural maintenance of chromosomes protein.	0.993
CLUG_00439	CLUG_03080	C4XWW0	C4Y3G7	Rad21_Rec8_N domain-containing protein.	Structural maintenance of chromosomes protein.	0.690
CLUG_00439	CLUG_03412	C4XWW0	C4Y5H8	Rad21_Rec8_N domain-containing protein.	Structural maintenance of chromosomes protein.	0.721
CLUG_00439	CLUG_03478	C4XWW0	C4Y5P4	Rad21_Rec8_N domain-containing protein.	Uncharacterized protein.	0.657
CLUG_00439	CLUG_03580	C4XWW0	C4Y5Z6	Rad21_Rec8_N domain-containing protein.	Sister chromatid cohesion protein.	0.938
CLUG_00439	CLUG_04636	C4XWW0	C4Y8V8	Rad21_Rec8_N domain-containing protein.	Uncharacterized protein.	0.872
CLUG_00439	CLUG_04637	C4XWW0	C4Y8V9	Rad21_Rec8_N domain-containing protein.	Uncharacterized protein.	0.872
CLUG_00439	CLUG_05879	C4XWW0	C4YC62	Rad21_Rec8_N domain-containing protein.	N-acetyltransferase domain-containing protein.	0.825
CLUG_00834	CLUG_00439	C4XY11	C4XWW0	Peptidase C50 domain-containing protein.	Rad21_Rec8_N domain-containing protein.	0.982
CLUG_00834	CLUG_00872	C4XY11	C4XY49	Peptidase C50 domain-containing protein.	Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes.	0.580
CLUG_00834	CLUG_01739	C4XY11	C4Y0K7	Peptidase C50 domain-containing protein.	SCD domain-containing protein.	0.980
CLUG_00834	CLUG_02337	C4XY11	C4Y3W5	Peptidase C50 domain-containing protein.	Structural maintenance of chromosomes protein.	0.981
CLUG_00834	CLUG_02401	C4XY11	C4Y429	Peptidase C50 domain-containing protein.	Structural maintenance of chromosomes protein.	0.983
CLUG_00834	CLUG_02672	C4XY11	C4Y2A9	Peptidase C50 domain-containing protein.	Cnd3 domain-containing protein.	0.599
CLUG_00834	CLUG_03080	C4XY11	C4Y3G7	Peptidase C50 domain-containing protein.	Structural maintenance of chromosomes protein.	0.718
CLUG_00834	CLUG_03412	C4XY11	C4Y5H8	Peptidase C50 domain-containing protein.	Structural maintenance of chromosomes protein.	0.761
CLUG_00834	CLUG_03478	C4XY11	C4Y5P4	Peptidase C50 domain-containing protein.	Uncharacterized protein.	0.989