(5 nodes) Vacuolar protein sorting-associated protein 13 network (Clavispora lusitaniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLUG_01387	Uncharacterized protein. (837 aa)
	CLUG_01388	Uncharacterized protein. (947 aa)
	CLUG_01389	VPS13_mid_rpt domain-containing protein. (602 aa)
	CLUG_01391	Uncharacterized protein. (668 aa)
	CLUG_02444	Uncharacterized protein. (343 aa)

Your Current Organism:

Clavispora lusitaniae

NCBI taxonomy Id: 306902
Other names: C. lusitaniae ATCC 42720, Candida lusitaniae ATCC 42720, Clavispora lusitaniae ATCC 42720

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLUG_01387	CLUG_01388	C4XZK5	C4XZK6	Uncharacterized protein.	Uncharacterized protein.	0.942
CLUG_01387	CLUG_01389	C4XZK5	C4XZK7	Uncharacterized protein.	VPS13_mid_rpt domain-containing protein.	0.927
CLUG_01387	CLUG_01391	C4XZK5	C4XZK9	Uncharacterized protein.	Uncharacterized protein.	0.931
CLUG_01388	CLUG_01387	C4XZK6	C4XZK5	Uncharacterized protein.	Uncharacterized protein.	0.942
CLUG_01388	CLUG_01389	C4XZK6	C4XZK7	Uncharacterized protein.	VPS13_mid_rpt domain-containing protein.	0.941
CLUG_01388	CLUG_01391	C4XZK6	C4XZK9	Uncharacterized protein.	Uncharacterized protein.	0.936
CLUG_01389	CLUG_01387	C4XZK7	C4XZK5	VPS13_mid_rpt domain-containing protein.	Uncharacterized protein.	0.927
CLUG_01389	CLUG_01388	C4XZK7	C4XZK6	VPS13_mid_rpt domain-containing protein.	Uncharacterized protein.	0.941
CLUG_01389	CLUG_01391	C4XZK7	C4XZK9	VPS13_mid_rpt domain-containing protein.	Uncharacterized protein.	0.945
CLUG_01391	CLUG_01387	C4XZK9	C4XZK5	Uncharacterized protein.	Uncharacterized protein.	0.931
CLUG_01391	CLUG_01388	C4XZK9	C4XZK6	Uncharacterized protein.	Uncharacterized protein.	0.936
CLUG_01391	CLUG_01389	C4XZK9	C4XZK7	Uncharacterized protein.	VPS13_mid_rpt domain-containing protein.	0.945