(16 nodes) Oxidoreduction-driven active transmembrane transporter activity network (Clavispora lusitaniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLUG_04278	L51_S25_CI-B8 domain-containing protein. (91 aa)
	CLUG_00538	zf-CHCC domain-containing protein. (146 aa)
	CLUG_01453	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family. (472 aa)
	CLUG_01879	Uncharacterized protein. (219 aa)
	CLUG_02073	Cytochrome c oxidase subunit 7A; This small integral protein plays a role in holoenzyme assembly or stability. (62 aa)
	CLUG_02669	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (139 aa)
	CLUG_02783	Cytochrome c domain-containing protein. (287 aa)
	CLUG_03938	Uncharacterized protein. (154 aa)
	CLUG_04147	Uncharacterized protein. (205 aa)
	CLUG_04416	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family. (282 aa)
	CLUG_04466	Uncharacterized protein; Belongs to the complex I LYR family. (120 aa)
	CLUG_04957	Uncharacterized protein; Belongs to the complex I LYR family. (107 aa)
	CLUG_04964	Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family. (103 aa)
	CLUG_05257	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family. (208 aa)
	CLUG_05494	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (212 aa)
	CLUG_05783	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family. (756 aa)

Your Current Organism:

Clavispora lusitaniae

NCBI taxonomy Id: 306902
Other names: C. lusitaniae ATCC 42720, Candida lusitaniae ATCC 42720, Clavispora lusitaniae ATCC 42720

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLUG_00538	CLUG_01453	C4XX65	C4XZS1	zf-CHCC domain-containing protein.	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	0.999
CLUG_00538	CLUG_01879	C4XX65	C4Y0Z7	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.999
CLUG_00538	CLUG_02669	C4XX65	C4Y2A6	zf-CHCC domain-containing protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
CLUG_00538	CLUG_02783	C4XX65	C4Y2M0	zf-CHCC domain-containing protein.	Cytochrome c domain-containing protein.	0.990
CLUG_00538	CLUG_03938	C4XX65	C4Y704	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.999
CLUG_00538	CLUG_04147	C4XX65	C4Y7G9	zf-CHCC domain-containing protein.	Uncharacterized protein.	0.825
CLUG_00538	CLUG_04278	C4XX65	C4Y7V0	zf-CHCC domain-containing protein.	L51_S25_CI-B8 domain-containing protein.	0.999
CLUG_00538	CLUG_04416	C4XX65	C4Y888	zf-CHCC domain-containing protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.998
CLUG_00538	CLUG_04466	C4XX65	C4Y8D8	zf-CHCC domain-containing protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.999
CLUG_00538	CLUG_04957	C4XX65	C4YA19	zf-CHCC domain-containing protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.999
CLUG_00538	CLUG_04964	C4XX65	C4YA26	zf-CHCC domain-containing protein.	Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family.	0.964
CLUG_00538	CLUG_05257	C4XX65	C4YAM9	zf-CHCC domain-containing protein.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.998
CLUG_00538	CLUG_05494	C4XX65	C4YBB6	zf-CHCC domain-containing protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.996
CLUG_00538	CLUG_05783	C4XX65	C4YCE4	zf-CHCC domain-containing protein.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.998
CLUG_01453	CLUG_00538	C4XZS1	C4XX65	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	zf-CHCC domain-containing protein.	0.999
CLUG_01453	CLUG_01879	C4XZS1	C4Y0Z7	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	Uncharacterized protein.	0.999
CLUG_01453	CLUG_02669	C4XZS1	C4Y2A6	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
CLUG_01453	CLUG_02783	C4XZS1	C4Y2M0	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	Cytochrome c domain-containing protein.	0.999
CLUG_01453	CLUG_03938	C4XZS1	C4Y704	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	Uncharacterized protein.	0.999
CLUG_01453	CLUG_04147	C4XZS1	C4Y7G9	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	Uncharacterized protein.	0.892