(68 nodes) Endosomal transport network (Clavispora lusitaniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLUG_00035	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (938 aa)
	CLUG_00024	Uncharacterized protein. (221 aa)
	CLUG_00134	ENTH domain-containing protein. (387 aa)
	CLUG_00231	Uncharacterized protein. (180 aa)
	CLUG_00264	Uncharacterized protein. (813 aa)
	CLUG_00366	Uncharacterized protein. (220 aa)
	CLUG_00444	GLUE N-terminal domain-containing protein. (596 aa)
	CLUG_00479	Uncharacterized protein. (214 aa)
	CLUG_00625	Uncharacterized protein. (172 aa)
	CLUG_00631	N-acetyltransferase domain-containing protein. (334 aa)
	CLUG_01287	Uncharacterized protein. (362 aa)
	CLUG_01371	Dopey_N domain-containing protein. (1692 aa)
	CLUG_01410	Uncharacterized protein. (294 aa)
	CLUG_01531	Uncharacterized protein. (177 aa)
	CLUG_01553	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family. (523 aa)
	CLUG_01555	Uncharacterized protein. (199 aa)
	CLUG_01596	Uncharacterized protein. (313 aa)
	CLUG_01882	Uncharacterized protein. (637 aa)
	CLUG_01934	DAO domain-containing protein. (459 aa)
	CLUG_02003	BRO1 domain-containing protein. (160 aa)
	CLUG_02004	BRO1 domain-containing protein. (618 aa)
	CLUG_02037	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (932 aa)
	CLUG_02239	Uncharacterized protein. (1609 aa)
	CLUG_02889	PX domain-containing protein. (596 aa)
	CLUG_02890	Uncharacterized protein. (559 aa)
	CLUG_02892	PX domain-containing protein. (607 aa)
	CLUG_02939	Uncharacterized protein. (254 aa)
	CLUG_03092	Uncharacterized protein. (1148 aa)
	CLUG_02418	E3 ubiquitin-protein ligase. (766 aa)
	CLUG_02598	Uncharacterized protein. (236 aa)
	CLUG_03392	t-SNARE coiled-coil homology domain-containing protein. (217 aa)
	CLUG_03447	Vps53_N domain-containing protein. (792 aa)
	CLUG_03463	Uncharacterized protein. (653 aa)
	CLUG_03535	Cell division control protein 48; Belongs to the AAA ATPase family. (825 aa)
	CLUG_03568	Uncharacterized protein. (480 aa)
	CLUG_03745	PX domain-containing protein. (660 aa)
	CLUG_03786	PH domain-containing protein. (823 aa)
	CLUG_03795	Uncharacterized protein. (258 aa)
	CLUG_03818	Uncharacterized protein. (140 aa)
	CLUG_03860	PX domain-containing protein. (652 aa)
	CLUG_03882	Uncharacterized protein. (150 aa)
	CLUG_04135	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (193 aa)
	CLUG_04169	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (268 aa)
	CLUG_04261	Uncharacterized protein. (237 aa)
	CLUG_04370	Uncharacterized protein. (234 aa)
	CLUG_04378	Uncharacterized protein. (203 aa)
	CLUG_04382	Uncharacterized protein. (153 aa)
	CLUG_04408	Uncharacterized protein. (297 aa)
	CLUG_04451	Uncharacterized protein. (268 aa)
	CLUG_04465	RIC1 domain-containing protein. (1028 aa)
	CLUG_04741	VPS9 domain-containing protein. (731 aa)
	CLUG_04745	Uncharacterized protein. (1004 aa)
	CLUG_04770	Uncharacterized protein. (182 aa)
	CLUG_05169	Uncharacterized protein; Belongs to the AAA ATPase family. (431 aa)
	CLUG_05221	Uncharacterized protein. (800 aa)
	CLUG_05222	Uncharacterized protein. (188 aa)
	CLUG_05223	Uncharacterized protein. (604 aa)
	CLUG_05226	Uncharacterized protein. (226 aa)
	CLUG_05270	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1121 aa)
	CLUG_05301	Uncharacterized protein. (134 aa)
	CLUG_05469	Uncharacterized protein. (843 aa)
	CLUG_05474	Uncharacterized protein. (334 aa)
	CLUG_05481	Uncharacterized protein. (214 aa)
	CLUG_05718	Uncharacterized protein. (291 aa)
	CLUG_05719	PX domain-containing protein. (315 aa)
	CLUG_05855	Vps54 domain-containing protein. (1237 aa)
	CLUG_05791	Uncharacterized protein. (1344 aa)
	CLUG_05933	VPS9 domain-containing protein. (662 aa)

Your Current Organism:

Clavispora lusitaniae

NCBI taxonomy Id: 306902
Other names: C. lusitaniae ATCC 42720, Candida lusitaniae ATCC 42720, Clavispora lusitaniae ATCC 42720

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLUG_00024	CLUG_00035	C4XVS9	C4XVR8	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.411
CLUG_00024	CLUG_00366	C4XVS9	C4XWP3	Uncharacterized protein.	Uncharacterized protein.	0.531
CLUG_00024	CLUG_00479	C4XVS9	C4XX06	Uncharacterized protein.	Uncharacterized protein.	0.509
CLUG_00024	CLUG_00625	C4XVS9	C4XXF2	Uncharacterized protein.	Uncharacterized protein.	0.523
CLUG_00024	CLUG_03745	C4XVS9	C4Y6G2	Uncharacterized protein.	PX domain-containing protein.	0.508
CLUG_00024	CLUG_04451	C4XVS9	C4Y8C3	Uncharacterized protein.	Uncharacterized protein.	0.522
CLUG_00024	CLUG_04741	C4XVS9	C4Y964	Uncharacterized protein.	VPS9 domain-containing protein.	0.706
CLUG_00024	CLUG_05933	C4XVS9	C4YCK5	Uncharacterized protein.	VPS9 domain-containing protein.	0.698
CLUG_00035	CLUG_00024	C4XVR8	C4XVS9	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.411
CLUG_00035	CLUG_00366	C4XVR8	C4XWP3	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.541
CLUG_00035	CLUG_00444	C4XVR8	C4XWX1	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	GLUE N-terminal domain-containing protein.	0.479
CLUG_00035	CLUG_00479	C4XVR8	C4XX06	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.473
CLUG_00035	CLUG_00625	C4XVR8	C4XXF2	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.530
CLUG_00035	CLUG_01287	C4XVR8	C4XZA5	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.477
CLUG_00035	CLUG_01553	C4XVR8	C4Y021	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.936
CLUG_00035	CLUG_02889	C4XVR8	C4Y2X6	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.635
CLUG_00035	CLUG_02892	C4XVR8	C4Y2X9	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.547
CLUG_00035	CLUG_03745	C4XVR8	C4Y6G2	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.986
CLUG_00035	CLUG_03860	C4XVR8	C4Y6S6	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.547
CLUG_00035	CLUG_04135	C4XVR8	C4Y7F7	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.999