(21 nodes) Autophagy - other network (Clavispora lusitaniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLUG_00036	Uncharacterized protein. (1889 aa)
	CLUG_00079	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (139 aa)
	CLUG_00291	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy. (340 aa)
	CLUG_00717	Uncharacterized protein. (162 aa)
	CLUG_00974	Autophagy-related protein 3. (299 aa)
	CLUG_01037	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily. (753 aa)
	CLUG_01394	Protein kinase domain-containing protein. (837 aa)
	CLUG_01723	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. (271 aa)
	CLUG_01952	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (857 aa)
	CLUG_01990	Serine/threonine-protein phosphatase. (333 aa)
	CLUG_02096	Uncharacterized protein. (575 aa)
	CLUG_02118	Uncharacterized protein. (433 aa)
	CLUG_01215	ATG11 domain-containing protein. (927 aa)
	CLUG_03005	Phosphatidylinositol 3-kinase VPS34. (1022 aa)
	CLUG_02477	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Autophagy is essential for maintenance of amino acid levels and protein synthesis under nitrogen starvation. Required for selective autophagic degradation of the nucleus (nucleophagy) as well as for mitophagy wh [...] (657 aa)
	CLUG_03364	WD_REPEATS_REGION domain-containing protein. (1414 aa)
	CLUG_04033	Uncharacterized protein. (541 aa)
	CLUG_04627	Serine/threonine-protein kinase TOR. (1298 aa)
	CLUG_04663	Uncharacterized protein. (473 aa)
	CLUG_05346	WD_REPEATS_REGION domain-containing protein. (311 aa)
	CLUG_05741	Uncharacterized protein. (1510 aa)

Your Current Organism:

Clavispora lusitaniae

NCBI taxonomy Id: 306902
Other names: C. lusitaniae ATCC 42720, Candida lusitaniae ATCC 42720, Clavispora lusitaniae ATCC 42720

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLUG_00036	CLUG_00079	C4XVR9	C4XVU6	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.590
CLUG_00036	CLUG_00291	C4XVR9	C4XWG8	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	0.601
CLUG_00036	CLUG_00717	C4XVR9	C4XXP5	Uncharacterized protein.	Uncharacterized protein.	0.588
CLUG_00036	CLUG_00974	C4XVR9	C4XYF1	Uncharacterized protein.	Autophagy-related protein 3.	0.590
CLUG_00036	CLUG_01037	C4XVR9	C4XYL4	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.645
CLUG_00036	CLUG_01215	C4XVR9	C4Y274	Uncharacterized protein.	ATG11 domain-containing protein.	0.587
CLUG_00036	CLUG_01394	C4XVR9	C4XZL2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.997
CLUG_00036	CLUG_01723	C4XVR9	C4Y0J1	Uncharacterized protein.	Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.	0.594
CLUG_00036	CLUG_01952	C4XVR9	C4Y170	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.973
CLUG_00036	CLUG_02096	C4XVR9	C4Y1L4	Uncharacterized protein.	Uncharacterized protein.	0.991
CLUG_00036	CLUG_02477	C4XVR9	C4Y4A5	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Autophagy is essential for maintenance of amino acid levels and protein synthesis under nitrogen starvation. Required for selective autophagic degradation of the nucleus (nucleophagy) as well as for mitophagy wh [...]	0.590
CLUG_00036	CLUG_03005	C4XVR9	C4Y392	Uncharacterized protein.	Phosphatidylinositol 3-kinase VPS34.	0.590
CLUG_00036	CLUG_04033	C4XVR9	C4Y799	Uncharacterized protein.	Uncharacterized protein.	0.975
CLUG_00036	CLUG_04663	C4XVR9	C4Y8Y5	Uncharacterized protein.	Uncharacterized protein.	0.590
CLUG_00036	CLUG_05741	C4XVR9	C4YC13	Uncharacterized protein.	Uncharacterized protein.	0.602
CLUG_00079	CLUG_00036	C4XVU6	C4XVR9	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Uncharacterized protein.	0.590
CLUG_00079	CLUG_00291	C4XVU6	C4XWG8	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	0.639
CLUG_00079	CLUG_00717	C4XVU6	C4XXP5	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Uncharacterized protein.	0.626
CLUG_00079	CLUG_00974	C4XVU6	C4XYF1	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Autophagy-related protein 3.	0.999
CLUG_00079	CLUG_01037	C4XVU6	C4XYL4	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.461