(101 nodes) RNA recognition motif, and K Homology domain, type 1 network (Oryzias melastigma)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ralyl	RRM domain-containing protein. (292 aa)
	LOC112145330	TAR DNA binding protein. (402 aa)
	ENSOMEP00000001041	Transformer 2 beta homolog. (182 aa)
	LOC112144649	RNA binding motif protein 5. (855 aa)
	ENSOMEP00000001537	Uncharacterized protein. (464 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1187 aa)
	LOC112163197	Serine and arginine rich splicing factor 9. (243 aa)
	LOC112150117	Tumor protein p63 regulated 1. (273 aa)
	LOC112149479	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (457 aa)
	tardbp	TAR DNA binding protein, like. (299 aa)
	ENSOMEP00000003182	Serine and arginine rich splicing factor 1a. (244 aa)
	hnrnpa3	Heterogeneous nuclear ribonucleoprotein A3. (334 aa)
	SRSF4	Serine and arginine rich splicing factor 4. (350 aa)
	CSDC2	Cold shock domain containing C2. (155 aa)
	LOC112155993	RNA binding motif protein 4.3. (347 aa)
	ENSOMEP00000005008	Serine and arginine rich splicing factor 6a. (342 aa)
	LOC112147230	RRM domain-containing protein. (450 aa)
	ENSOMEP00000005325	Uncharacterized protein. (291 aa)
	ENSOMEP00000005872	Uncharacterized protein. (470 aa)
	LOC112136794	Uncharacterized protein. (563 aa)
	ENSOMEP00000006181	Heterogeneous nuclear ribonucleoprotein R. (620 aa)
	ENSOMEP00000006521	Serine and arginine rich splicing factor 2a. (234 aa)
	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L like. (557 aa)
	ilf2	Interleukin enhancer binding factor 2. (387 aa)
	LOC112150316	Scaffold attachment factor B. (807 aa)
	LOC112136384	G-rich RNA sequence binding factor 1. (377 aa)
	LOC112160041	Uncharacterized protein. (227 aa)
	ENSOMEP00000008403	Uncharacterized protein. (194 aa)
	syncrip	Synaptotagmin binding, cytoplasmic RNA interacting protein, like. (542 aa)
	YBX2	Y-box binding protein 2. (337 aa)
	LOC112147851	RALY RNA binding protein like. (289 aa)
	LOC112146495	Uncharacterized protein. (476 aa)
	ENSOMEP00000011266	RRM domain-containing protein. (85 aa)
	ENSOMEP00000011388	RRM domain-containing protein. (149 aa)
	ENSOMEP00000011507	RRM domain-containing protein. (317 aa)
	ENSOMEP00000011752	Heterogeneous nuclear ribonucleoprotein M. (698 aa)
	ENSOMEP00000011882	Uncharacterized protein. (145 aa)
	hnrnpu	Heterogeneous nuclear ribonucleoprotein Ub. (798 aa)
	ENSOMEP00000014439	Uncharacterized protein. (596 aa)
	LOC112159244	Uncharacterized protein. (329 aa)
	LOC112162965	Cytotoxic granule-associated RNA binding protein 1, like. (411 aa)
	pabpn1	Poly(A) binding protein, nuclear 1. (284 aa)
	TIAL1	TIA1 cytotoxic granule associated RNA binding protein like 1. (261 aa)
	LOC112147402	Polypyrimidine tract binding protein 2b. (543 aa)
	LOC112163155	Transformer 2 alpha homolog. (263 aa)
	LOC112153216	Si:ch211-107m4.1. (629 aa)
	LOC112158455	Synaptotagmin binding, cytoplasmic RNA interacting protein. (663 aa)
	srsf10	Serine and arginine rich splicing factor 10. (249 aa)
	zranb2	Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family. (318 aa)
	ENSOMEP00000017845	U2 small nuclear RNA auxiliary factor 1. (171 aa)
	pcbp3	Uncharacterized protein. (321 aa)
	ENSOMEP00000018919	Serine and arginine rich splicing factor 5b. (403 aa)
	ENSOMEP00000019018	Uncharacterized protein. (289 aa)
	LOC112148346	TIA1 cytotoxic granule-associated RNA binding protein. (386 aa)
	LOC112139316	SRSF protein kinase 1b. (643 aa)
	hnrnpk	Heterogeneous nuclear ribonucleoprotein K. (435 aa)
	ENSOMEP00000022444	EWS RNA-binding protein 1b. (600 aa)
	LOC112157945	Uncharacterized protein. (475 aa)
	ENSOMEP00000022497	Uncharacterized protein. (297 aa)
	ENSOMEP00000022513	RRM domain-containing protein. (188 aa)
	ybx1	Y box binding protein 1. (305 aa)
	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3. (398 aa)
	LOC112159715	Poly(rC) binding protein 2. (324 aa)
	LOC112155995	Uncharacterized protein. (349 aa)
	LOC112153034	Heterogeneous nuclear ribonucleoprotein A/Ba. (329 aa)
	LOC112155673	RNA binding motif protein 4.3. (338 aa)
	LOC112144809	RRM domain-containing protein. (177 aa)
	PTBP2	Polypyrimidine tract binding protein 2a. (165 aa)
	hnrnph1	Heterogeneous nuclear ribonucleoprotein H1. (408 aa)
	LOC112163035	Heterogeneous nuclear ribonucleoprotein K, like. (420 aa)
	ddx4	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; Belongs to the DEAD box helicase family. (626 aa)
	LOC112153172	DND microRNA-mediated repression inhibitor 1. (371 aa)
	LOC112159114	Uncharacterized protein. (457 aa)
	ENSOMEP00000028536	Uncharacterized protein. (173 aa)
	ENSOMEP00000029774	RRM domain-containing protein. (216 aa)
	SRSF3	Serine and arginine rich splicing factor 3b. (166 aa)
	LOC112162297	Uncharacterized protein. (434 aa)
	LOC112146836	RRM domain-containing protein. (213 aa)
	rbmx	RNA binding motif protein X-linked. (389 aa)
	ptbp1	Polypyrimidine tract binding protein 1a. (575 aa)
	ilf3	Interleukin enhancer binding factor 3b. (839 aa)
	LOC112140724	Uncharacterized protein. (263 aa)
	PABPN1L	Poly(A) binding protein nuclear 1 like, cytoplasmic. (363 aa)
	dazl	Deleted in azoospermia-like. (229 aa)
	LOC112163469	Heterogeneous nuclear ribonucleoprotein D. (313 aa)
	PCBP2	Poly(rC) binding protein 2. (454 aa)
	ENSOMEP00000033643	Uncharacterized protein. (112 aa)
	rspry1	Ring finger and SPRY domain containing 1. (548 aa)
	srpk1	SRSF protein kinase 1a. (643 aa)
	LOC112156181	RRM domain-containing protein. (308 aa)
	ENSOMEP00000034413	Uncharacterized protein. (442 aa)
	ENSOMEP00000034523	annotation not available (166 aa)
	hnrnpl	Heterogeneous nuclear ribonucleoprotein L. (530 aa)
	srsf7	Uncharacterized protein. (264 aa)
	cirbp	Cold inducible RNA binding protein b. (238 aa)
	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U like 1. (868 aa)
	srsf11	Serine and arginine rich splicing factor 11. (460 aa)
	ENSOMEP00000035412	RRM domain-containing protein. (319 aa)
	LOC112148547	Serine and arginine rich splicing factor 5a. (271 aa)
	LOC112145348	Uncharacterized protein. (476 aa)
	LOC112142831	Uncharacterized protein. (314 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDC2	ENSOMEP00000003182	ENSOMEP00000004795	ENSOMEP00000003182	Cold shock domain containing C2.	Serine and arginine rich splicing factor 1a.	0.493
CSDC2	ENSOMEP00000005008	ENSOMEP00000004795	ENSOMEP00000005008	Cold shock domain containing C2.	Serine and arginine rich splicing factor 6a.	0.448
CSDC2	ENSOMEP00000006181	ENSOMEP00000004795	ENSOMEP00000006181	Cold shock domain containing C2.	Heterogeneous nuclear ribonucleoprotein R.	0.457
CSDC2	ENSOMEP00000006521	ENSOMEP00000004795	ENSOMEP00000006521	Cold shock domain containing C2.	Serine and arginine rich splicing factor 2a.	0.475
CSDC2	ENSOMEP00000011266	ENSOMEP00000004795	ENSOMEP00000011266	Cold shock domain containing C2.	RRM domain-containing protein.	0.448
CSDC2	ENSOMEP00000011388	ENSOMEP00000004795	ENSOMEP00000011388	Cold shock domain containing C2.	RRM domain-containing protein.	0.489
CSDC2	ENSOMEP00000011752	ENSOMEP00000004795	ENSOMEP00000011752	Cold shock domain containing C2.	Heterogeneous nuclear ribonucleoprotein M.	0.500
CSDC2	ENSOMEP00000011882	ENSOMEP00000004795	ENSOMEP00000011882	Cold shock domain containing C2.	Uncharacterized protein.	0.464
CSDC2	ENSOMEP00000014439	ENSOMEP00000004795	ENSOMEP00000014439	Cold shock domain containing C2.	Uncharacterized protein.	0.489
CSDC2	ENSOMEP00000018919	ENSOMEP00000004795	ENSOMEP00000018919	Cold shock domain containing C2.	Serine and arginine rich splicing factor 5b.	0.448
CSDC2	ENSOMEP00000022444	ENSOMEP00000004795	ENSOMEP00000022444	Cold shock domain containing C2.	EWS RNA-binding protein 1b.	0.522
CSDC2	ENSOMEP00000033643	ENSOMEP00000004795	ENSOMEP00000033643	Cold shock domain containing C2.	Uncharacterized protein.	0.450
CSDC2	HNRNPH3	ENSOMEP00000004795	ENSOMEP00000024399	Cold shock domain containing C2.	Heterogeneous nuclear ribonucleoprotein H3.	0.459
CSDC2	HNRNPLL	ENSOMEP00000004795	ENSOMEP00000007376	Cold shock domain containing C2.	Heterogeneous nuclear ribonucleoprotein L like.	0.489
CSDC2	HNRNPUL1	ENSOMEP00000004795	ENSOMEP00000034972	Cold shock domain containing C2.	Heterogeneous nuclear ribonucleoprotein U like 1.	0.507
CSDC2	LOC112136384	ENSOMEP00000004795	ENSOMEP00000008024	Cold shock domain containing C2.	G-rich RNA sequence binding factor 1.	0.459
CSDC2	LOC112136794	ENSOMEP00000004795	ENSOMEP00000005877	Cold shock domain containing C2.	Uncharacterized protein.	0.477
CSDC2	LOC112140724	ENSOMEP00000004795	ENSOMEP00000032335	Cold shock domain containing C2.	Uncharacterized protein.	0.493
CSDC2	LOC112144809	ENSOMEP00000004795	ENSOMEP00000025485	Cold shock domain containing C2.	RRM domain-containing protein.	0.464
CSDC2	LOC112146836	ENSOMEP00000004795	ENSOMEP00000031581	Cold shock domain containing C2.	RRM domain-containing protein.	0.475