11 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rad51ap1	RAD51 associated protein 1. (313 aa)
	LOC112137531	WD_REPEATS_REGION domain-containing protein. (610 aa)
	ENSOMEP00000005961	Uncharacterized protein. (345 aa)
	usp12	Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family. (372 aa)
	ENSOMEP00000007258	Ubiquitin carboxyl-terminal hydrolase. (784 aa)
	LOC112155980	Ubiquitin specific peptidase 12b; Belongs to the peptidase C19 family. (375 aa)
	wdr48	WD repeat domain 48b. (677 aa)
	wdr20	WD repeat domain 20a. (613 aa)
	usp46	Ubiquitin carboxyl-terminal hydrolase. (384 aa)
	EML5	EMAP like 5. (1959 aa)
	LOC112149806	DM1 locus, WD repeat containing. (688 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EML5	ENSOMEP00000005961	ENSOMEP00000034691	ENSOMEP00000005961	EMAP like 5.	Uncharacterized protein.	0.564
EML5	ENSOMEP00000007258	ENSOMEP00000034691	ENSOMEP00000007258	EMAP like 5.	Ubiquitin carboxyl-terminal hydrolase.	0.564
EML5	LOC112155980	ENSOMEP00000034691	ENSOMEP00000018282	EMAP like 5.	Ubiquitin specific peptidase 12b; Belongs to the peptidase C19 family.	0.564
EML5	usp12	ENSOMEP00000034691	ENSOMEP00000006413	EMAP like 5.	Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family.	0.564
EML5	usp46	ENSOMEP00000034691	ENSOMEP00000031124	EMAP like 5.	Ubiquitin carboxyl-terminal hydrolase.	0.564
EML5	wdr48	ENSOMEP00000034691	ENSOMEP00000028681	EMAP like 5.	WD repeat domain 48b.	0.730
ENSOMEP00000005961	EML5	ENSOMEP00000005961	ENSOMEP00000034691	Uncharacterized protein.	EMAP like 5.	0.564
ENSOMEP00000005961	LOC112137531	ENSOMEP00000005961	ENSOMEP00000004030	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.887
ENSOMEP00000005961	LOC112149806	ENSOMEP00000005961	ENSOMEP00000036310	Uncharacterized protein.	DM1 locus, WD repeat containing.	0.887
ENSOMEP00000005961	rad51ap1	ENSOMEP00000005961	ENSOMEP00000003953	Uncharacterized protein.	RAD51 associated protein 1.	0.566
ENSOMEP00000005961	wdr20	ENSOMEP00000005961	ENSOMEP00000030617	Uncharacterized protein.	WD repeat domain 20a.	0.887
ENSOMEP00000005961	wdr48	ENSOMEP00000005961	ENSOMEP00000028681	Uncharacterized protein.	WD repeat domain 48b.	0.961
ENSOMEP00000007258	EML5	ENSOMEP00000007258	ENSOMEP00000034691	Ubiquitin carboxyl-terminal hydrolase.	EMAP like 5.	0.564
ENSOMEP00000007258	LOC112137531	ENSOMEP00000007258	ENSOMEP00000004030	Ubiquitin carboxyl-terminal hydrolase.	WD_REPEATS_REGION domain-containing protein.	0.825
ENSOMEP00000007258	LOC112149806	ENSOMEP00000007258	ENSOMEP00000036310	Ubiquitin carboxyl-terminal hydrolase.	DM1 locus, WD repeat containing.	0.825
ENSOMEP00000007258	rad51ap1	ENSOMEP00000007258	ENSOMEP00000003953	Ubiquitin carboxyl-terminal hydrolase.	RAD51 associated protein 1.	0.875
ENSOMEP00000007258	wdr20	ENSOMEP00000007258	ENSOMEP00000030617	Ubiquitin carboxyl-terminal hydrolase.	WD repeat domain 20a.	0.825
ENSOMEP00000007258	wdr48	ENSOMEP00000007258	ENSOMEP00000028681	Ubiquitin carboxyl-terminal hydrolase.	WD repeat domain 48b.	0.999
LOC112137531	ENSOMEP00000005961	ENSOMEP00000004030	ENSOMEP00000005961	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.887
LOC112137531	ENSOMEP00000007258	ENSOMEP00000004030	ENSOMEP00000007258	WD_REPEATS_REGION domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.825