5 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSOMEP00000009363	Uncharacterized protein. (508 aa)
	ENSOMEP00000009387	Uncharacterized protein. (494 aa)
	ENSOMEP00000014699	Uncharacterized protein. (302 aa)
	gas7	Uncharacterized protein. (474 aa)
	ENSOMEP00000027376	Uncharacterized protein. (984 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000009363	ENSOMEP00000009387	ENSOMEP00000009363	ENSOMEP00000009387	Uncharacterized protein.	Uncharacterized protein.	0.992
ENSOMEP00000009363	ENSOMEP00000014699	ENSOMEP00000009363	ENSOMEP00000014699	Uncharacterized protein.	Uncharacterized protein.	0.985
ENSOMEP00000009363	ENSOMEP00000027376	ENSOMEP00000009363	ENSOMEP00000027376	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000009363	gas7	ENSOMEP00000009363	ENSOMEP00000020523	Uncharacterized protein.	Uncharacterized protein.	0.997
ENSOMEP00000009387	ENSOMEP00000009363	ENSOMEP00000009387	ENSOMEP00000009363	Uncharacterized protein.	Uncharacterized protein.	0.992
ENSOMEP00000009387	ENSOMEP00000014699	ENSOMEP00000009387	ENSOMEP00000014699	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000009387	ENSOMEP00000027376	ENSOMEP00000009387	ENSOMEP00000027376	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000009387	gas7	ENSOMEP00000009387	ENSOMEP00000020523	Uncharacterized protein.	Uncharacterized protein.	0.997
ENSOMEP00000014699	ENSOMEP00000009363	ENSOMEP00000014699	ENSOMEP00000009363	Uncharacterized protein.	Uncharacterized protein.	0.985
ENSOMEP00000014699	ENSOMEP00000009387	ENSOMEP00000014699	ENSOMEP00000009387	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000014699	ENSOMEP00000027376	ENSOMEP00000014699	ENSOMEP00000027376	Uncharacterized protein.	Uncharacterized protein.	0.936
ENSOMEP00000014699	gas7	ENSOMEP00000014699	ENSOMEP00000020523	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSOMEP00000027376	ENSOMEP00000009363	ENSOMEP00000027376	ENSOMEP00000009363	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000027376	ENSOMEP00000009387	ENSOMEP00000027376	ENSOMEP00000009387	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000027376	ENSOMEP00000014699	ENSOMEP00000027376	ENSOMEP00000014699	Uncharacterized protein.	Uncharacterized protein.	0.936
ENSOMEP00000027376	gas7	ENSOMEP00000027376	ENSOMEP00000020523	Uncharacterized protein.	Uncharacterized protein.	0.813
gas7	ENSOMEP00000009363	ENSOMEP00000020523	ENSOMEP00000009363	Uncharacterized protein.	Uncharacterized protein.	0.997
gas7	ENSOMEP00000009387	ENSOMEP00000020523	ENSOMEP00000009387	Uncharacterized protein.	Uncharacterized protein.	0.997
gas7	ENSOMEP00000014699	ENSOMEP00000020523	ENSOMEP00000014699	Uncharacterized protein.	Uncharacterized protein.	0.994
gas7	ENSOMEP00000027376	ENSOMEP00000020523	ENSOMEP00000027376	Uncharacterized protein.	Uncharacterized protein.	0.813