STRINGSTRING
LOC112145639 LOC112145639 NRP1 NRP1 FARP1 FARP1 sema3b sema3b LOC112152372 LOC112152372 PLXND1 PLXND1 ENSOMEP00000012427 ENSOMEP00000012427 LOC112144749 LOC112144749 nrp1 nrp1 LOC112159039 LOC112159039 LOC112145377 LOC112145377 sema3c sema3c LOC112154247 LOC112154247 sema3g sema3g sema3e sema3e plxna4 plxna4 farp2 farp2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC112145639Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (789 aa)
NRP1Neuropilin; Belongs to the neuropilin family. (947 aa)
FARP1FERM, ARH/RhoGEF and pleckstrin domain protein 1. (1036 aa)
sema3bSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (803 aa)
LOC112152372Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (796 aa)
PLXND1Plexin D1. (1899 aa)
ENSOMEP00000012427Plexin A1a. (1851 aa)
LOC112144749Sema domain-containing protein. (1895 aa)
nrp1Neuropilin; Belongs to the neuropilin family. (930 aa)
LOC112159039Plexin A2. (1977 aa)
LOC112145377Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (796 aa)
sema3cSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family. (764 aa)
LOC112154247Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (845 aa)
sema3gSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (775 aa)
sema3eSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (783 aa)
plxna4Plexin A4. (1916 aa)
farp2FERM, RhoGEF and pleckstrin domain protein 2. (1056 aa)
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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