(10 nodes) BAAT/Acyl-CoA thioester hydrolase C-terminal, and Thioesterase domain network (Oryzias melastigma)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	acot8	Acyl-CoA thioesterase 8. (337 aa)
	acot7	Acyl-CoA thioesterase 7. (348 aa)
	LOC112143157	Thioesterase superfamily member 4. (248 aa)
	ENSOMEP00000006496	BAAT_C domain-containing protein. (204 aa)
	LOC112158782	Acyl-CoA thioesterase 16. (427 aa)
	LOC112162957	Uncharacterized protein. (423 aa)
	ENSOMEP00000021624	BAAT_C domain-containing protein. (250 aa)
	LOC112138814	Uncharacterized protein. (424 aa)
	ENSOMEP00000032900	Uncharacterized protein. (509 aa)
	LOC112145720	Uncharacterized protein. (466 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000006496	ENSOMEP00000032900	ENSOMEP00000006496	ENSOMEP00000032900	BAAT_C domain-containing protein.	Uncharacterized protein.	0.672
ENSOMEP00000006496	LOC112138814	ENSOMEP00000006496	ENSOMEP00000030441	BAAT_C domain-containing protein.	Uncharacterized protein.	0.632
ENSOMEP00000006496	LOC112143157	ENSOMEP00000006496	ENSOMEP00000005140	BAAT_C domain-containing protein.	Thioesterase superfamily member 4.	0.771
ENSOMEP00000006496	LOC112145720	ENSOMEP00000006496	ENSOMEP00000034134	BAAT_C domain-containing protein.	Uncharacterized protein.	0.668
ENSOMEP00000006496	LOC112162957	ENSOMEP00000006496	ENSOMEP00000021602	BAAT_C domain-containing protein.	Uncharacterized protein.	0.629
ENSOMEP00000006496	acot7	ENSOMEP00000006496	ENSOMEP00000003760	BAAT_C domain-containing protein.	Acyl-CoA thioesterase 7.	0.769
ENSOMEP00000006496	acot8	ENSOMEP00000006496	ENSOMEP00000000238	BAAT_C domain-containing protein.	Acyl-CoA thioesterase 8.	0.796
ENSOMEP00000021624	ENSOMEP00000032900	ENSOMEP00000021624	ENSOMEP00000032900	BAAT_C domain-containing protein.	Uncharacterized protein.	0.681
ENSOMEP00000021624	LOC112138814	ENSOMEP00000021624	ENSOMEP00000030441	BAAT_C domain-containing protein.	Uncharacterized protein.	0.633
ENSOMEP00000021624	LOC112143157	ENSOMEP00000021624	ENSOMEP00000005140	BAAT_C domain-containing protein.	Thioesterase superfamily member 4.	0.771
ENSOMEP00000021624	LOC112145720	ENSOMEP00000021624	ENSOMEP00000034134	BAAT_C domain-containing protein.	Uncharacterized protein.	0.675
ENSOMEP00000021624	LOC112162957	ENSOMEP00000021624	ENSOMEP00000021602	BAAT_C domain-containing protein.	Uncharacterized protein.	0.633
ENSOMEP00000021624	acot7	ENSOMEP00000021624	ENSOMEP00000003760	BAAT_C domain-containing protein.	Acyl-CoA thioesterase 7.	0.769
ENSOMEP00000021624	acot8	ENSOMEP00000021624	ENSOMEP00000000238	BAAT_C domain-containing protein.	Acyl-CoA thioesterase 8.	0.796
ENSOMEP00000032900	ENSOMEP00000006496	ENSOMEP00000032900	ENSOMEP00000006496	Uncharacterized protein.	BAAT_C domain-containing protein.	0.672
ENSOMEP00000032900	ENSOMEP00000021624	ENSOMEP00000032900	ENSOMEP00000021624	Uncharacterized protein.	BAAT_C domain-containing protein.	0.681
ENSOMEP00000032900	LOC112138814	ENSOMEP00000032900	ENSOMEP00000030441	Uncharacterized protein.	Uncharacterized protein.	0.788
ENSOMEP00000032900	LOC112143157	ENSOMEP00000032900	ENSOMEP00000005140	Uncharacterized protein.	Thioesterase superfamily member 4.	0.876
ENSOMEP00000032900	LOC112145720	ENSOMEP00000032900	ENSOMEP00000034134	Uncharacterized protein.	Uncharacterized protein.	0.646
ENSOMEP00000032900	LOC112162957	ENSOMEP00000032900	ENSOMEP00000021602	Uncharacterized protein.	Uncharacterized protein.	0.791