31 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC112146892	Netrin 1b. (600 aa)
	tmem41b	Transmembrane protein 41B. (282 aa)
	LOC112145639	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (789 aa)
	CDH2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (910 aa)
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC112152372	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (796 aa)
	LOC112148299	Survival of motor neuron 1, telomeric. (283 aa)
	ENSOMEP00000006887	Ras homolog gene family, member Gd. (125 aa)
	ENSOMEP00000008869	Notum pectinacetylesterase 2. (481 aa)
	ENSOMEP00000009044	RE1-silencing transcription factor. (968 aa)
	chodl	Chondrolectin. (300 aa)
	lhx1	LIM homeobox 1a. (407 aa)
	ENSOMEP00000010893	Netrin 5. (641 aa)
	ENSOMEP00000013647	NK2 homeobox 2a. (254 aa)
	ENSOMEP00000014983	Protein kinase domain-containing protein. (137 aa)
	ENSOMEP00000015021	Carbohydrate sulfotransferase. (430 aa)
	LOC112138676	Ras homolog family member Gb. (191 aa)
	LOC112158880	E2F transcription factor 7. (696 aa)
	LOC112148320	Ring finger protein 165b. (355 aa)
	LOC112138551	Cadherin_C domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins. (107 aa)
	LOC112145377	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (796 aa)
	ENSOMEP00000023307	E2F transcription factor 8. (573 aa)
	ppp1r12a	Protein phosphatase 1 regulatory subunit. (1074 aa)
	ENSOMEP00000024352	Protein kinase domain-containing protein. (104 aa)
	LOC112154247	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (845 aa)
	LOC112157910	NK2 homeobox 2b. (250 aa)
	NTN1	Netrin 1. (638 aa)
	LOC112152858	Protein phosphatase 1 regulatory subunit. (904 aa)
	LOC112153976	Netrin 2. (630 aa)
	LOC112138771	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins. (928 aa)
	ENSOMEP00000027486	Ring finger protein 165a. (339 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH2	LOC112138771	ENSOMEP00000003375	ENSOMEP00000030796	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.	0.891
ENSOMEP00000006887	LOC112152858	ENSOMEP00000006887	ENSOMEP00000032726	Ras homolog gene family, member Gd.	Protein phosphatase 1 regulatory subunit.	0.468
ENSOMEP00000006887	ppp1r12a	ENSOMEP00000006887	ENSOMEP00000023595	Ras homolog gene family, member Gd.	Protein phosphatase 1 regulatory subunit.	0.468
ENSOMEP00000014983	LOC112152372	ENSOMEP00000014983	ENSOMEP00000006448	Protein kinase domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	0.575
ENSOMEP00000014983	LOC112154247	ENSOMEP00000014983	ENSOMEP00000025632	Protein kinase domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.575
ENSOMEP00000023307	LOC112158880	ENSOMEP00000023307	ENSOMEP00000016553	E2F transcription factor 8.	E2F transcription factor 7.	0.682
ENSOMEP00000024352	LOC112152372	ENSOMEP00000024352	ENSOMEP00000006448	Protein kinase domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	0.575
ENSOMEP00000024352	LOC112154247	ENSOMEP00000024352	ENSOMEP00000025632	Protein kinase domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.575
LOC112138676	LOC112152858	ENSOMEP00000015972	ENSOMEP00000032726	Ras homolog family member Gb.	Protein phosphatase 1 regulatory subunit.	0.468
LOC112138676	ppp1r12a	ENSOMEP00000015972	ENSOMEP00000023595	Ras homolog family member Gb.	Protein phosphatase 1 regulatory subunit.	0.468
LOC112138771	CDH2	ENSOMEP00000030796	ENSOMEP00000003375	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.891
LOC112152372	ENSOMEP00000014983	ENSOMEP00000006448	ENSOMEP00000014983	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	Protein kinase domain-containing protein.	0.575
LOC112152372	ENSOMEP00000024352	ENSOMEP00000006448	ENSOMEP00000024352	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	Protein kinase domain-containing protein.	0.575
LOC112152372	cdk5	ENSOMEP00000006448	ENSOMEP00000006243	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.575
LOC112152858	ENSOMEP00000006887	ENSOMEP00000032726	ENSOMEP00000006887	Protein phosphatase 1 regulatory subunit.	Ras homolog gene family, member Gd.	0.468
LOC112152858	LOC112138676	ENSOMEP00000032726	ENSOMEP00000015972	Protein phosphatase 1 regulatory subunit.	Ras homolog family member Gb.	0.468
LOC112154247	ENSOMEP00000014983	ENSOMEP00000025632	ENSOMEP00000014983	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Protein kinase domain-containing protein.	0.575
LOC112154247	ENSOMEP00000024352	ENSOMEP00000025632	ENSOMEP00000024352	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Protein kinase domain-containing protein.	0.575
LOC112154247	cdk5	ENSOMEP00000025632	ENSOMEP00000006243	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.575
LOC112158880	ENSOMEP00000023307	ENSOMEP00000016553	ENSOMEP00000023307	E2F transcription factor 7.	E2F transcription factor 8.	0.682