13 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	itgb1bp1	Integrin beta 1 binding protein 1. (198 aa)
	LOC112154003	Uncharacterized protein. (377 aa)
	LOC112157938	Guanine nucleotide binding protein (G protein), alpha 13b. (378 aa)
	ENSOMEP00000021177	WD repeat containing planar cell polarity effector. (636 aa)
	LOC112149754	Transforming growth factor beta; Belongs to the TGF-beta family. (379 aa)
	gna12	G protein subunit alpha 12. (385 aa)
	ENSOMEP00000026259	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1. (675 aa)
	ENSOMEP00000029174	Battenin. (244 aa)
	ENSOMEP00000030265	Battenin. (520 aa)
	ENSOMEP00000035992	Uncharacterized protein. (220 aa)
	appl2	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2. (666 aa)
	akap12	A kinase (PRKA) anchor protein 12b. (1352 aa)
	aqp1	Aquaporin 1a (Colton blood group), tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (262 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000026259	ENSOMEP00000035992	ENSOMEP00000026259	ENSOMEP00000035992	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Uncharacterized protein.	0.995
ENSOMEP00000026259	appl2	ENSOMEP00000026259	ENSOMEP00000007941	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.995
ENSOMEP00000029174	ENSOMEP00000030265	ENSOMEP00000029174	ENSOMEP00000030265	Battenin.	Battenin.	0.870
ENSOMEP00000030265	ENSOMEP00000029174	ENSOMEP00000030265	ENSOMEP00000029174	Battenin.	Battenin.	0.870
ENSOMEP00000035992	ENSOMEP00000026259	ENSOMEP00000035992	ENSOMEP00000026259	Uncharacterized protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.995
ENSOMEP00000035992	appl2	ENSOMEP00000035992	ENSOMEP00000007941	Uncharacterized protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.994
LOC112154003	LOC112157938	ENSOMEP00000005979	ENSOMEP00000002189	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.972
LOC112154003	gna12	ENSOMEP00000005979	ENSOMEP00000020374	Uncharacterized protein.	G protein subunit alpha 12.	0.892
LOC112157938	LOC112154003	ENSOMEP00000002189	ENSOMEP00000005979	Guanine nucleotide binding protein (G protein), alpha 13b.	Uncharacterized protein.	0.972
LOC112157938	gna12	ENSOMEP00000002189	ENSOMEP00000020374	Guanine nucleotide binding protein (G protein), alpha 13b.	G protein subunit alpha 12.	0.900
appl2	ENSOMEP00000026259	ENSOMEP00000007941	ENSOMEP00000026259	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.995
appl2	ENSOMEP00000035992	ENSOMEP00000007941	ENSOMEP00000035992	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	Uncharacterized protein.	0.994
gna12	LOC112154003	ENSOMEP00000020374	ENSOMEP00000005979	G protein subunit alpha 12.	Uncharacterized protein.	0.892
gna12	LOC112157938	ENSOMEP00000020374	ENSOMEP00000002189	G protein subunit alpha 12.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.900