(12 nodes) Formation of anatomical boundary network (Oryzias melastigma)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MAFB	MAF bZIP transcription factor B. (406 aa)
	egr2	Early growth response 2b. (446 aa)
	epha4	Eph receptor A4, like. (990 aa)
	rfng	Beta-1,3-N-acetylglucosaminyltransferase. (375 aa)
	LOC112155310	Ephrin-B2a; Belongs to the ephrin family. (334 aa)
	LOC112147698	Uncharacterized protein. (1076 aa)
	ENSOMEP00000019491	Uncharacterized protein. (112 aa)
	LOC112148176	Mothers against decapentaplegic homolog. (510 aa)
	ENSOMEP00000023058	Mothers against decapentaplegic homolog. (493 aa)
	LOC112136593	Mothers against decapentaplegic homolog. (536 aa)
	ENSOMEP00000026742	Mindbomb E3 ubiquitin protein ligase 1. (1036 aa)
	med12	Mediator complex subunit 12. (2126 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000023058	LOC112136593	ENSOMEP00000023058	ENSOMEP00000023904	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.891
ENSOMEP00000023058	LOC112148176	ENSOMEP00000023058	ENSOMEP00000021474	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.885
LOC112136593	ENSOMEP00000023058	ENSOMEP00000023904	ENSOMEP00000023058	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.891
LOC112136593	LOC112148176	ENSOMEP00000023904	ENSOMEP00000021474	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.870
LOC112147698	LOC112155310	ENSOMEP00000017822	ENSOMEP00000016253	Uncharacterized protein.	Ephrin-B2a; Belongs to the ephrin family.	0.741
LOC112148176	ENSOMEP00000023058	ENSOMEP00000021474	ENSOMEP00000023058	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.885
LOC112148176	LOC112136593	ENSOMEP00000021474	ENSOMEP00000023904	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.870
LOC112155310	LOC112147698	ENSOMEP00000016253	ENSOMEP00000017822	Ephrin-B2a; Belongs to the ephrin family.	Uncharacterized protein.	0.741
LOC112155310	epha4	ENSOMEP00000016253	ENSOMEP00000033072	Ephrin-B2a; Belongs to the ephrin family.	Eph receptor A4, like.	0.741
MAFB	egr2	ENSOMEP00000029030	ENSOMEP00000030611	MAF bZIP transcription factor B.	Early growth response 2b.	0.464
egr2	MAFB	ENSOMEP00000030611	ENSOMEP00000029030	Early growth response 2b.	MAF bZIP transcription factor B.	0.464
epha4	LOC112155310	ENSOMEP00000033072	ENSOMEP00000016253	Eph receptor A4, like.	Ephrin-B2a; Belongs to the ephrin family.	0.741