(18 nodes) NF-kappaB binding network (Oryzias melastigma)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdk5rap3	CDK5 regulatory subunit associated protein 3. (523 aa)
	LOC112146043	E1A binding protein p300 b. (2771 aa)
	LOC112153984	E1A binding protein p300 a. (2690 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (674 aa)
	ENSOMEP00000009676	Programmed cell death 11. (1197 aa)
	ENSOMEP00000009718	Uncharacterized protein. (646 aa)
	LOC112158034	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (302 aa)
	ENSOMEP00000012830	Proteasome subunit alpha type. (292 aa)
	ENSOMEP00000014163	Ring finger protein 25. (470 aa)
	ENSOMEP00000017708	ANK_REP_REGION domain-containing protein. (386 aa)
	ENSOMEP00000019288	Uncharacterized protein. (91 aa)
	brms1	BRMS1 transcriptional repressor and anoikis regulator. (272 aa)
	commd7	COMM domain containing 7. (224 aa)
	ENSOMEP00000028219	Proteasome endopeptidase complex. (228 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (317 aa)
	commd6	COMM domain containing 6. (200 aa)
	MTDH	Uncharacterized protein. (533 aa)
	LOC112150025	Proteasome subunit alpha type. (246 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000009676	ENSOMEP00000009718	ENSOMEP00000009676	ENSOMEP00000009718	Programmed cell death 11.	Uncharacterized protein.	0.925
ENSOMEP00000009718	ENSOMEP00000009676	ENSOMEP00000009718	ENSOMEP00000009676	Uncharacterized protein.	Programmed cell death 11.	0.925
ENSOMEP00000012830	ENSOMEP00000028219	ENSOMEP00000012830	ENSOMEP00000028219	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.928
ENSOMEP00000012830	LOC112150025	ENSOMEP00000012830	ENSOMEP00000032758	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.961
ENSOMEP00000017708	LOC112158034	ENSOMEP00000017708	ENSOMEP00000012820	ANK_REP_REGION domain-containing protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.488
ENSOMEP00000017708	nfkbia	ENSOMEP00000017708	ENSOMEP00000028241	ANK_REP_REGION domain-containing protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.490
ENSOMEP00000019288	LOC112146043	ENSOMEP00000019288	ENSOMEP00000004390	Uncharacterized protein.	E1A binding protein p300 b.	0.529
ENSOMEP00000019288	LOC112153984	ENSOMEP00000019288	ENSOMEP00000007732	Uncharacterized protein.	E1A binding protein p300 a.	0.529
ENSOMEP00000019288	faf1	ENSOMEP00000019288	ENSOMEP00000008912	Uncharacterized protein.	Fas (TNFRSF6) associated factor 1.	0.584
ENSOMEP00000028219	ENSOMEP00000012830	ENSOMEP00000028219	ENSOMEP00000012830	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.928
ENSOMEP00000028219	LOC112150025	ENSOMEP00000028219	ENSOMEP00000032758	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.981
LOC112146043	ENSOMEP00000019288	ENSOMEP00000004390	ENSOMEP00000019288	E1A binding protein p300 b.	Uncharacterized protein.	0.529
LOC112146043	LOC112158034	ENSOMEP00000004390	ENSOMEP00000012820	E1A binding protein p300 b.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.529
LOC112146043	nfkbia	ENSOMEP00000004390	ENSOMEP00000028241	E1A binding protein p300 b.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.529
LOC112150025	ENSOMEP00000012830	ENSOMEP00000032758	ENSOMEP00000012830	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.961
LOC112150025	ENSOMEP00000028219	ENSOMEP00000032758	ENSOMEP00000028219	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.981
LOC112150025	LOC112158034	ENSOMEP00000032758	ENSOMEP00000012820	Proteasome subunit alpha type.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.415
LOC112153984	ENSOMEP00000019288	ENSOMEP00000007732	ENSOMEP00000019288	E1A binding protein p300 a.	Uncharacterized protein.	0.529
LOC112153984	LOC112158034	ENSOMEP00000007732	ENSOMEP00000012820	E1A binding protein p300 a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.529
LOC112153984	nfkbia	ENSOMEP00000007732	ENSOMEP00000028241	E1A binding protein p300 a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.529