7 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSOMEP00000016023	Uncharacterized protein. (497 aa)
	kiaa1107	Si:ch73-389b16.2. (1521 aa)
	ENSOMEP00000009387	Uncharacterized protein. (494 aa)
	ENSOMEP00000014699	Uncharacterized protein. (302 aa)
	ENSOMEP00000014715	Intersectin 1 (SH3 domain protein). (1093 aa)
	ENSOMEP00000027877	Uncharacterized protein. (192 aa)
	ENSOMEP00000032288	Uncharacterized protein. (310 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSOMEP00000009387	ENSOMEP00000014699	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000009387	ENSOMEP00000014715	Uncharacterized protein.	Intersectin 1 (SH3 domain protein).	0.986
ENSOMEP00000009387	ENSOMEP00000016023	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSOMEP00000009387	ENSOMEP00000027877	Uncharacterized protein.	Uncharacterized protein.	0.996
ENSOMEP00000009387	ENSOMEP00000032288	Uncharacterized protein.	Uncharacterized protein.	0.987
ENSOMEP00000014699	ENSOMEP00000009387	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000014699	ENSOMEP00000014715	Uncharacterized protein.	Intersectin 1 (SH3 domain protein).	0.879
ENSOMEP00000014699	ENSOMEP00000016023	Uncharacterized protein.	Uncharacterized protein.	0.985
ENSOMEP00000014699	ENSOMEP00000027877	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000014699	ENSOMEP00000032288	Uncharacterized protein.	Uncharacterized protein.	0.986
ENSOMEP00000014715	ENSOMEP00000009387	Intersectin 1 (SH3 domain protein).	Uncharacterized protein.	0.986
ENSOMEP00000014715	ENSOMEP00000014699	Intersectin 1 (SH3 domain protein).	Uncharacterized protein.	0.879
ENSOMEP00000014715	ENSOMEP00000016023	Intersectin 1 (SH3 domain protein).	Uncharacterized protein.	0.997
ENSOMEP00000014715	ENSOMEP00000027877	Intersectin 1 (SH3 domain protein).	Uncharacterized protein.	0.985
ENSOMEP00000014715	ENSOMEP00000032288	Intersectin 1 (SH3 domain protein).	Uncharacterized protein.	0.985
ENSOMEP00000016023	ENSOMEP00000009387	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSOMEP00000016023	ENSOMEP00000014699	Uncharacterized protein.	Uncharacterized protein.	0.985
ENSOMEP00000016023	ENSOMEP00000014715	Uncharacterized protein.	Intersectin 1 (SH3 domain protein).	0.997
ENSOMEP00000016023	ENSOMEP00000027877	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSOMEP00000016023	ENSOMEP00000032288	Uncharacterized protein.	Uncharacterized protein.	0.988