(8 nodes) Regulation of RNA polymerase II regulatory region sequence-specific DNA binding network (Oryzias melastigma)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC112153984	E1A binding protein p300 a. (2690 aa)
	znf593	Zinc finger protein 593. (125 aa)
	zmpste24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (467 aa)
	LOC112153222	Nuclear receptor binding SET domain protein 1a. (2049 aa)
	ddit3	DNA-damage-inducible transcript 3. (326 aa)
	HAND1	Heart and neural crest derivatives expressed 1. (191 aa)
	LOC112142357	Nuclear receptor binding SET domain protein 1b. (2521 aa)
	LOC112146043	E1A binding protein p300 b. (2771 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC112142357	LOC112146043	ENSOMEP00000002075	ENSOMEP00000004390	Nuclear receptor binding SET domain protein 1b.	E1A binding protein p300 b.	0.565
LOC112142357	LOC112153984	ENSOMEP00000002075	ENSOMEP00000007732	Nuclear receptor binding SET domain protein 1b.	E1A binding protein p300 a.	0.565
LOC112146043	LOC112142357	ENSOMEP00000004390	ENSOMEP00000002075	E1A binding protein p300 b.	Nuclear receptor binding SET domain protein 1b.	0.565
LOC112146043	LOC112153222	ENSOMEP00000004390	ENSOMEP00000025207	E1A binding protein p300 b.	Nuclear receptor binding SET domain protein 1a.	0.565
LOC112146043	ddit3	ENSOMEP00000004390	ENSOMEP00000032833	E1A binding protein p300 b.	DNA-damage-inducible transcript 3.	0.434
LOC112153222	LOC112146043	ENSOMEP00000025207	ENSOMEP00000004390	Nuclear receptor binding SET domain protein 1a.	E1A binding protein p300 b.	0.565
LOC112153222	LOC112153984	ENSOMEP00000025207	ENSOMEP00000007732	Nuclear receptor binding SET domain protein 1a.	E1A binding protein p300 a.	0.565
LOC112153984	LOC112142357	ENSOMEP00000007732	ENSOMEP00000002075	E1A binding protein p300 a.	Nuclear receptor binding SET domain protein 1b.	0.565
LOC112153984	LOC112153222	ENSOMEP00000007732	ENSOMEP00000025207	E1A binding protein p300 a.	Nuclear receptor binding SET domain protein 1a.	0.565
LOC112153984	ddit3	ENSOMEP00000007732	ENSOMEP00000032833	E1A binding protein p300 a.	DNA-damage-inducible transcript 3.	0.434
ddit3	LOC112146043	ENSOMEP00000032833	ENSOMEP00000004390	DNA-damage-inducible transcript 3.	E1A binding protein p300 b.	0.434
ddit3	LOC112153984	ENSOMEP00000032833	ENSOMEP00000007732	DNA-damage-inducible transcript 3.	E1A binding protein p300 a.	0.434