5 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSOMEP00000035194	Uncharacterized protein. (666 aa)
	LOC112152429	Uncharacterized protein. (354 aa)
	ENSOMEP00000008048	Uncharacterized protein. (692 aa)
	LOC112158166	Uncharacterized protein. (354 aa)
	ENSOMEP00000001805	Uncharacterized protein. (1743 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000001805	ENSOMEP00000008048	ENSOMEP00000001805	ENSOMEP00000008048	Uncharacterized protein.	Uncharacterized protein.	0.941
ENSOMEP00000001805	ENSOMEP00000035194	ENSOMEP00000001805	ENSOMEP00000035194	Uncharacterized protein.	Uncharacterized protein.	0.961
ENSOMEP00000008048	ENSOMEP00000001805	ENSOMEP00000008048	ENSOMEP00000001805	Uncharacterized protein.	Uncharacterized protein.	0.941
ENSOMEP00000008048	LOC112152429	ENSOMEP00000008048	ENSOMEP00000008902	Uncharacterized protein.	Uncharacterized protein.	0.788
ENSOMEP00000008048	LOC112158166	ENSOMEP00000008048	ENSOMEP00000003523	Uncharacterized protein.	Uncharacterized protein.	0.788
ENSOMEP00000035194	ENSOMEP00000001805	ENSOMEP00000035194	ENSOMEP00000001805	Uncharacterized protein.	Uncharacterized protein.	0.961
ENSOMEP00000035194	LOC112152429	ENSOMEP00000035194	ENSOMEP00000008902	Uncharacterized protein.	Uncharacterized protein.	0.793
ENSOMEP00000035194	LOC112158166	ENSOMEP00000035194	ENSOMEP00000003523	Uncharacterized protein.	Uncharacterized protein.	0.793
LOC112152429	ENSOMEP00000008048	ENSOMEP00000008902	ENSOMEP00000008048	Uncharacterized protein.	Uncharacterized protein.	0.788
LOC112152429	ENSOMEP00000035194	ENSOMEP00000008902	ENSOMEP00000035194	Uncharacterized protein.	Uncharacterized protein.	0.793
LOC112158166	ENSOMEP00000008048	ENSOMEP00000003523	ENSOMEP00000008048	Uncharacterized protein.	Uncharacterized protein.	0.788
LOC112158166	ENSOMEP00000035194	ENSOMEP00000003523	ENSOMEP00000035194	Uncharacterized protein.	Uncharacterized protein.	0.793