29 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	meiob	Methionine sulfoxide reductase B1b. (461 aa)
	ENSOMEP00000004644	Polymerase (DNA directed), eta. (302 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (598 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	ENSOMEP00000002833	Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
	rcbtb2	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (547 aa)
	rfc2	Replication factor C (activator 1) 2. (357 aa)
	ENSOMEP00000028916	Replication factor C subunit 1. (1042 aa)
	ENSOMEP00000028815	Replication factor C (activator 1) 3. (279 aa)
	ENSOMEP00000027927	Ubiquitin-like domain-containing protein. (77 aa)
	kxd1	KxDL motif containing 1. (195 aa)
	rpa3	Replication protein A3. (122 aa)
	SPATA5	Spermatogenesis associated 5. (792 aa)
	ENSOMEP00000021420	CHY-type domain-containing protein. (211 aa)
	ENSOMEP00000020966	Ribosomal protein S27a. (183 aa)
	nploc4	NPL4 homolog, ubiquitin recognition factor. (622 aa)
	rchy1	Ring finger and CHY zinc finger domain containing 1. (261 aa)
	rfc4	Replication factor C (activator 1) 4. (355 aa)
	sprtn	SprT-like N-terminal domain. (539 aa)
	ENSOMEP00000035400	Ubiquitin-like domain-containing protein. (137 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	rpa2	Replication protein A2. (270 aa)
	ufd1	Ubiquitin recognition factor in ER associated degradation 1. (310 aa)
	LOC112146405	ATPase family AAA domain containing 5a. (1739 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (527 aa)
	ENSOMEP00000010830	Replication factor C (activator 1) 5. (326 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (649 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (750 aa)
	LOC112159947	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (573 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000002833	ENSOMEP00000004644	ENSOMEP00000002833	ENSOMEP00000004644	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Polymerase (DNA directed), eta.	0.906
ENSOMEP00000002833	ENSOMEP00000010830	ENSOMEP00000002833	ENSOMEP00000010830	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Replication factor C (activator 1) 5.	0.672
ENSOMEP00000002833	ENSOMEP00000020966	ENSOMEP00000002833	ENSOMEP00000020966	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.999
ENSOMEP00000002833	ENSOMEP00000027927	ENSOMEP00000002833	ENSOMEP00000027927	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like domain-containing protein.	0.989
ENSOMEP00000002833	ENSOMEP00000028815	ENSOMEP00000002833	ENSOMEP00000028815	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Replication factor C (activator 1) 3.	0.672
ENSOMEP00000002833	ENSOMEP00000035400	ENSOMEP00000002833	ENSOMEP00000035400	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like domain-containing protein.	0.999
ENSOMEP00000002833	LOC112159947	ENSOMEP00000002833	ENSOMEP00000007229	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1.	0.467
ENSOMEP00000002833	RCBTB1	ENSOMEP00000002833	ENSOMEP00000011023	Ubiquitin A-52 residue ribosomal protein fusion product 1.	RCC1 and BTB domain containing protein 1.	0.467
ENSOMEP00000002833	SPATA5	ENSOMEP00000002833	ENSOMEP00000023247	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Spermatogenesis associated 5.	0.913
ENSOMEP00000002833	kxd1	ENSOMEP00000002833	ENSOMEP00000027436	Ubiquitin A-52 residue ribosomal protein fusion product 1.	KxDL motif containing 1.	0.779
ENSOMEP00000002833	nploc4	ENSOMEP00000002833	ENSOMEP00000019479	Ubiquitin A-52 residue ribosomal protein fusion product 1.	NPL4 homolog, ubiquitin recognition factor.	0.963
ENSOMEP00000002833	pcna	ENSOMEP00000002833	ENSOMEP00000032797	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.972
ENSOMEP00000002833	rcbtb2	ENSOMEP00000002833	ENSOMEP00000000904	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2.	0.467
ENSOMEP00000002833	rfc2	ENSOMEP00000002833	ENSOMEP00000029238	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Replication factor C (activator 1) 2.	0.672
ENSOMEP00000002833	rfc4	ENSOMEP00000002833	ENSOMEP00000013769	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Replication factor C (activator 1) 4.	0.672
ENSOMEP00000002833	rpa2	ENSOMEP00000002833	ENSOMEP00000032794	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Replication protein A2.	0.693
ENSOMEP00000002833	spata5l1	ENSOMEP00000002833	ENSOMEP00000008156	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Spermatogenesis associated 5-like 1.	0.913
ENSOMEP00000002833	sprtn	ENSOMEP00000002833	ENSOMEP00000035732	Ubiquitin A-52 residue ribosomal protein fusion product 1.	SprT-like N-terminal domain.	0.729
ENSOMEP00000002833	ufd1	ENSOMEP00000002833	ENSOMEP00000032326	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin recognition factor in ER associated degradation 1.	0.924
ENSOMEP00000002833	vcp	ENSOMEP00000002833	ENSOMEP00000003488	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Valosin containing protein; Belongs to the AAA ATPase family.	0.914