44 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSOMEP00000021566	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (217 aa)
	ENSOMEP00000034970	Anaphase promoting complex subunit 7. (565 aa)
	cdc23	CDC23 (cell division cycle 23, yeast, homolog). (642 aa)
	cdk2	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
	ENSOMEP00000035400	Ubiquitin-like domain-containing protein. (137 aa)
	cdc20	Cell division cycle 20 homolog. (556 aa)
	ENSOMEP00000000357	BRD4 interacting chromatin remodeling complex associated protein. (1683 aa)
	ube2c	Ubiquitin-conjugating enzyme E2C; Belongs to the ubiquitin-conjugating enzyme family. (223 aa)
	cdk1	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily. (303 aa)
	anapc15	Anaphase promoting complex subunit 15. (122 aa)
	ccna2	Cyclin A2; Belongs to the cyclin family. (431 aa)
	LOC112136564	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (194 aa)
	skp1	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (163 aa)
	ENSOMEP00000002833	Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
	anapc11	APC11 anaphase promoting complex subunit 11 homolog (yeast). (84 aa)
	bicral	BRD4 interacting chromatin remodeling complex associated protein like. (773 aa)
	ube2s	Ubiquitin-conjugating enzyme E2S; Belongs to the ubiquitin-conjugating enzyme family. (232 aa)
	bub3	BUB3 mitotic checkpoint protein. (339 aa)
	ccna1	Cyclin A1; Belongs to the cyclin family. (457 aa)
	fbxo5	F-box protein 5. (410 aa)
	ENSOMEP00000011806	Anaphase promoting complex subunit 1. (1855 aa)
	cdc27	Cell division cycle 27. (802 aa)
	ccnb1	Cyclin B1; Belongs to the cyclin family. (400 aa)
	ENSOMEP00000015819	Protein kinase domain-containing protein. (358 aa)
	bub1b	BUB1 mitotic checkpoint serine/threonine kinase Bb. (426 aa)
	FBXO43	F-box protein 43. (561 aa)
	ENSOMEP00000018611	Uncharacterized protein. (730 aa)
	cdc26	Cell division cycle 26 homolog. (93 aa)
	FZR1	Fizzy/cell division cycle 20 related 1a. (498 aa)
	ENSOMEP00000020966	Ribosomal protein S27a. (183 aa)
	tm7sf3	Transmembrane 7 superfamily member 3. (563 aa)
	fam89a	Family with sequence similarity 89 member A. (175 aa)
	mad2l1	MAD2 mitotic arrest deficient-like 1 (yeast). (202 aa)
	cul1	Cullin 1b; Belongs to the cullin family. (777 aa)
	LOC112147217	Fizzy/cell division cycle 20 related 1b. (487 aa)
	kxd1	KxDL motif containing 1. (195 aa)
	ENSOMEP00000027927	Ubiquitin-like domain-containing protein. (77 aa)
	ENSOMEP00000028753	Anaphase promoting complex subunit 16. (135 aa)
	LOC112157610	Uncharacterized protein. (498 aa)
	cdc16	Cell division cycle 16 homolog (S. cerevisiae). (618 aa)
	anapc2	Anaphase promoting complex subunit 2; Belongs to the cullin family. (806 aa)
	ENSOMEP00000031513	ANAPC4_WD40 domain-containing protein. (206 aa)
	anapc5	Anaphase promoting complex subunit 5. (773 aa)
	LOC112137884	Ubiquitin-conjugating enzyme E2E 1; Belongs to the ubiquitin-conjugating enzyme family. (208 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000000357	ENSOMEP00000011806	ENSOMEP00000000357	ENSOMEP00000011806	BRD4 interacting chromatin remodeling complex associated protein.	Anaphase promoting complex subunit 1.	0.978
ENSOMEP00000000357	ENSOMEP00000015819	ENSOMEP00000000357	ENSOMEP00000015819	BRD4 interacting chromatin remodeling complex associated protein.	Protein kinase domain-containing protein.	0.679
ENSOMEP00000000357	ENSOMEP00000020966	ENSOMEP00000000357	ENSOMEP00000020966	BRD4 interacting chromatin remodeling complex associated protein.	Ribosomal protein S27a.	0.742
ENSOMEP00000000357	ENSOMEP00000021566	ENSOMEP00000000357	ENSOMEP00000021566	BRD4 interacting chromatin remodeling complex associated protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.952
ENSOMEP00000000357	ENSOMEP00000027927	ENSOMEP00000000357	ENSOMEP00000027927	BRD4 interacting chromatin remodeling complex associated protein.	Ubiquitin-like domain-containing protein.	0.590
ENSOMEP00000000357	ENSOMEP00000028753	ENSOMEP00000000357	ENSOMEP00000028753	BRD4 interacting chromatin remodeling complex associated protein.	Anaphase promoting complex subunit 16.	0.968
ENSOMEP00000000357	ENSOMEP00000031513	ENSOMEP00000000357	ENSOMEP00000031513	BRD4 interacting chromatin remodeling complex associated protein.	ANAPC4_WD40 domain-containing protein.	0.981
ENSOMEP00000000357	ENSOMEP00000034970	ENSOMEP00000000357	ENSOMEP00000034970	BRD4 interacting chromatin remodeling complex associated protein.	Anaphase promoting complex subunit 7.	0.979
ENSOMEP00000000357	ENSOMEP00000035400	ENSOMEP00000000357	ENSOMEP00000035400	BRD4 interacting chromatin remodeling complex associated protein.	Ubiquitin-like domain-containing protein.	0.590
ENSOMEP00000000357	FZR1	ENSOMEP00000000357	ENSOMEP00000019185	BRD4 interacting chromatin remodeling complex associated protein.	Fizzy/cell division cycle 20 related 1a.	0.903
ENSOMEP00000000357	LOC112136564	ENSOMEP00000000357	ENSOMEP00000002265	BRD4 interacting chromatin remodeling complex associated protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.643
ENSOMEP00000000357	LOC112137884	ENSOMEP00000000357	ENSOMEP00000033837	BRD4 interacting chromatin remodeling complex associated protein.	Ubiquitin-conjugating enzyme E2E 1; Belongs to the ubiquitin-conjugating enzyme family.	0.643
ENSOMEP00000000357	LOC112147217	ENSOMEP00000000357	ENSOMEP00000027014	BRD4 interacting chromatin remodeling complex associated protein.	Fizzy/cell division cycle 20 related 1b.	0.903
ENSOMEP00000000357	LOC112157610	ENSOMEP00000000357	ENSOMEP00000029947	BRD4 interacting chromatin remodeling complex associated protein.	Uncharacterized protein.	0.917
ENSOMEP00000000357	anapc11	ENSOMEP00000000357	ENSOMEP00000005820	BRD4 interacting chromatin remodeling complex associated protein.	APC11 anaphase promoting complex subunit 11 homolog (yeast).	0.947
ENSOMEP00000000357	anapc15	ENSOMEP00000000357	ENSOMEP00000001858	BRD4 interacting chromatin remodeling complex associated protein.	Anaphase promoting complex subunit 15.	0.971
ENSOMEP00000000357	anapc2	ENSOMEP00000000357	ENSOMEP00000030959	BRD4 interacting chromatin remodeling complex associated protein.	Anaphase promoting complex subunit 2; Belongs to the cullin family.	0.978
ENSOMEP00000000357	anapc5	ENSOMEP00000000357	ENSOMEP00000031895	BRD4 interacting chromatin remodeling complex associated protein.	Anaphase promoting complex subunit 5.	0.981
ENSOMEP00000000357	bub1b	ENSOMEP00000000357	ENSOMEP00000016156	BRD4 interacting chromatin remodeling complex associated protein.	BUB1 mitotic checkpoint serine/threonine kinase Bb.	0.917
ENSOMEP00000000357	bub3	ENSOMEP00000000357	ENSOMEP00000009959	BRD4 interacting chromatin remodeling complex associated protein.	BUB3 mitotic checkpoint protein.	0.921