50 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1050 aa)
	ENSOMEP00000035294	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1. (814 aa)
	LOC112157261	Uncharacterized protein. (757 aa)
	ENSOMEP00000034244	YTH domain containing 1. (660 aa)
	LOC112137937	Melanophilin b. (567 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (761 aa)
	LOC112153894	Im:7160594. (479 aa)
	ctnnb1	Catenin (cadherin-associated protein), beta 1. (783 aa)
	mre11	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (691 aa)
	LOC112162336	Signal transducer and activator of transcription. (786 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (317 aa)
	ENSOMEP00000027927	Ubiquitin-like domain-containing protein. (77 aa)
	crebbp	CREB binding protein b. (2411 aa)
	kxd1	KxDL motif containing 1. (195 aa)
	LOC112156380	Deltex 4, E3 ubiquitin ligase a. (775 aa)
	DDX41	DEAD-box helicase 41. (614 aa)
	LOC112142221	Uncharacterized protein. (556 aa)
	LOC112146942	Signal transducer and activator of transcription. (786 aa)
	nkiras2	NFKB inhibitor interacting Ras-like 2. (192 aa)
	ENSOMEP00000020966	Ribosomal protein S27a. (183 aa)
	nfkb2	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100). (892 aa)
	tbk1	TANK-binding kinase 1. (723 aa)
	ENSOMEP00000019288	Uncharacterized protein. (91 aa)
	ENSOMEP00000017184	Interferon regulatory factor 3. (431 aa)
	irf7	Interferon regulatory factor 7. (420 aa)
	LOC112137935	Uncharacterized protein. (1096 aa)
	lrrfip2	Leucine rich repeat (in FLII) interacting protein 2. (469 aa)
	sting1	Transmembrane protein 173. (386 aa)
	LOC112158034	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (302 aa)
	YTHDC2	YTH domain containing 2. (1364 aa)
	dhx57	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57. (1421 aa)
	ENSOMEP00000011981	Exonuclease domain-containing protein. (237 aa)
	LOC112154972	Uncharacterized protein. (608 aa)
	trim13	Tripartite motif containing 13. (416 aa)
	ENSOMEP00000010205	Major facilitator superfamily domain containing 1. (677 aa)
	ENSOMEP00000035400	Ubiquitin-like domain-containing protein. (137 aa)
	ikbkg	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (585 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1383 aa)
	LOC112153984	E1A binding protein p300 a. (2690 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (288 aa)
	ENSOMEP00000004505	CREB binding protein a. (2295 aa)
	dhx30	DEAH (Asp-Glu-Ala-His) box helicase 30. (1163 aa)
	LOC112146043	E1A binding protein p300 b. (2771 aa)
	ENSOMEP00000003944	Tripartite motif containing 32. (656 aa)
	LOC112155860	V-rel avian reticuloendotheliosis viral oncogene homolog A. (621 aa)
	ENSOMEP00000002833	Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
	LOC112154264	Protein kinase domain-containing protein. (765 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1187 aa)
	LOC112162018	Component of inhibitor of nuclear factor kappa B kinase complex. (731 aa)
	rel	REL proto-oncogene, NF-kB subunit. (629 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	ENSOMEP00000003944	ENSOMEP00000026889	ENSOMEP00000003944	DEAD-box helicase 41.	Tripartite motif containing 32.	0.462
DDX41	ENSOMEP00000017184	ENSOMEP00000026889	ENSOMEP00000017184	DEAD-box helicase 41.	Interferon regulatory factor 3.	0.609
DDX41	ENSOMEP00000027927	ENSOMEP00000026889	ENSOMEP00000027927	DEAD-box helicase 41.	Ubiquitin-like domain-containing protein.	0.612
DDX41	ENSOMEP00000035400	ENSOMEP00000026889	ENSOMEP00000035400	DEAD-box helicase 41.	Ubiquitin-like domain-containing protein.	0.645
DDX41	YTHDC2	ENSOMEP00000026889	ENSOMEP00000012806	DEAD-box helicase 41.	YTH domain containing 2.	0.635
DDX41	dhx29	ENSOMEP00000026889	ENSOMEP00000007788	DEAD-box helicase 41.	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily.	0.695
DDX41	dhx30	ENSOMEP00000026889	ENSOMEP00000004406	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box helicase 30.	0.657
DDX41	dhx36	ENSOMEP00000026889	ENSOMEP00000009760	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.756
DDX41	dhx57	ENSOMEP00000026889	ENSOMEP00000012549	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57.	0.636
DDX41	dhx9	ENSOMEP00000026889	ENSOMEP00000001580	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.780
DDX41	irf7	ENSOMEP00000026889	ENSOMEP00000016938	DEAD-box helicase 41.	Interferon regulatory factor 7.	0.482
DDX41	sting1	ENSOMEP00000026889	ENSOMEP00000014367	DEAD-box helicase 41.	Transmembrane protein 173.	0.693
DDX41	tbk1	ENSOMEP00000026889	ENSOMEP00000019662	DEAD-box helicase 41.	TANK-binding kinase 1.	0.548
DDX41	trim13	ENSOMEP00000026889	ENSOMEP00000011115	DEAD-box helicase 41.	Tripartite motif containing 13.	0.433
ENSOMEP00000002833	ENSOMEP00000003944	ENSOMEP00000002833	ENSOMEP00000003944	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Tripartite motif containing 32.	0.668
ENSOMEP00000002833	ENSOMEP00000004505	ENSOMEP00000002833	ENSOMEP00000004505	Ubiquitin A-52 residue ribosomal protein fusion product 1.	CREB binding protein a.	0.610
ENSOMEP00000002833	ENSOMEP00000019288	ENSOMEP00000002833	ENSOMEP00000019288	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.907
ENSOMEP00000002833	ENSOMEP00000020966	ENSOMEP00000002833	ENSOMEP00000020966	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.999
ENSOMEP00000002833	ENSOMEP00000027927	ENSOMEP00000002833	ENSOMEP00000027927	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like domain-containing protein.	0.989
ENSOMEP00000002833	ENSOMEP00000035294	ENSOMEP00000002833	ENSOMEP00000035294	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.	0.731