69 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ptpn7	Uncharacterized protein. (461 aa)
	LOC112146278	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (389 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	dusp7	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (384 aa)
	map2k1	Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily. (394 aa)
	dusp28	Dual specificity phosphatase 28. (148 aa)
	dusp16	Dual specificity phosphatase 16. (634 aa)
	LOC112163157	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (368 aa)
	ENSOMEP00000020086	Uncharacterized protein. (97 aa)
	ENSOMEP00000020877	Protein tyrosine phosphatase receptor type R. (572 aa)
	ENSOMEP00000020966	Ribosomal protein S27a. (183 aa)
	LOC112152089	Mitogen-activated protein kinase. (361 aa)
	paqr3	Progestin and adipoQ receptor family member IIIa. (311 aa)
	fnbp4	Formin binding protein 4. (870 aa)
	ENSOMEP00000005774	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (474 aa)
	LOC112147072	Dual specificity phosphatase 22b. (192 aa)
	LOC112137485	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (577 aa)
	braf	B-Raf proto-oncogene, serine/threonine kinase. (781 aa)
	mark3	Non-specific serine/threonine protein kinase. (802 aa)
	ENSOMEP00000002833	Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
	ssh1	Slingshot protein phosphatase 1a. (1034 aa)
	LOC112162043	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (184 aa)
	LOC112137260	Uncharacterized protein. (299 aa)
	ENSOMEP00000013464	Protein phosphatase 2, regulatory subunit A, beta b. (647 aa)
	relch	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing. (1187 aa)
	ppp4r1	WRNPLPNID domain-containing protein. (964 aa)
	styx	Serine/threonine/tyrosine interacting protein. (225 aa)
	KRAS	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	LOC112142429	Slingshot protein phosphatase 2b. (1188 aa)
	mapk1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (369 aa)
	PEBP4	Phosphatidylethanolamine binding protein 4. (196 aa)
	LOC112142631	Si:dkey-175m17.7. (883 aa)
	raf1	Raf-1 proto-oncogene, serine/threonine kinase a. (677 aa)
	dusp6	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (384 aa)
	dusp19	Dual specificity phosphatase 19a. (209 aa)
	ENSOMEP00000021559	Mitogen-activated protein kinase 12b. (358 aa)
	ENSOMEP00000021654	MOB kinase activator 2a. (331 aa)
	dusp8	Dual specificity phosphatase 8a. (657 aa)
	ENSOMEP00000022729	Slingshot protein phosphatase 1b. (663 aa)
	ENSOMEP00000023224	Dual specificity phosphatase 22a. (217 aa)
	ppp2ca	Serine/threonine-protein phosphatase. (309 aa)
	LOC112153492	Si:ch211-203d1.3. (608 aa)
	ptpn3	Protein tyrosine phosphatase non-receptor type 3. (871 aa)
	map2k2	Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily. (397 aa)
	ppp2r5e	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (481 aa)
	LOC112159710	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (359 aa)
	ssh2	Slingshot protein phosphatase 2a. (1194 aa)
	ENSOMEP00000026532	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (571 aa)
	dusp1	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (371 aa)
	ppp2cb	Serine/threonine-protein phosphatase. (309 aa)
	kxd1	KxDL motif containing 1. (195 aa)
	ppp2r5c	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (607 aa)
	ENSOMEP00000027927	Ubiquitin-like domain-containing protein. (77 aa)
	pebp1	Phosphatidylethanolamine binding protein 1. (187 aa)
	dusp22	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (191 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (869 aa)
	LOC112138750	Dual specificity phosphatase 19b. (210 aa)
	LOC112146394	Zgc:55558. (186 aa)
	ENSOMEP00000032095	Dual specificity phosphatase 12. (300 aa)
	dusp2	Dual specificity phosphatase 2. (315 aa)
	LOC112162964	Progestin and adipoQ receptor family member IIIb. (315 aa)
	ENSOMEP00000034958	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (412 aa)
	ppp5c	Serine/threonine-protein phosphatase. (491 aa)
	ENSOMEP00000035400	Ubiquitin-like domain-containing protein. (137 aa)
	araf	A-Raf proto-oncogene, serine/threonine kinase. (606 aa)
	ppp4r4	Protein phosphatase 4, regulatory subunit 4. (901 aa)
	dusp10	Dual specificity phosphatase 10; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (472 aa)
	brap	BRCA1 associated protein. (596 aa)
	ppp2r5a	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (508 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSOMEP00000002833	ENSOMEP00000031024	ENSOMEP00000002833	Cold shock domain containing E1, RNA-binding.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.687
CSDE1	ENSOMEP00000013464	ENSOMEP00000031024	ENSOMEP00000013464	Cold shock domain containing E1, RNA-binding.	Protein phosphatase 2, regulatory subunit A, beta b.	0.600
CSDE1	ENSOMEP00000020966	ENSOMEP00000031024	ENSOMEP00000020966	Cold shock domain containing E1, RNA-binding.	Ribosomal protein S27a.	0.679
CSDE1	ENSOMEP00000021559	ENSOMEP00000031024	ENSOMEP00000021559	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase 12b.	0.553
CSDE1	ENSOMEP00000026532	ENSOMEP00000031024	ENSOMEP00000026532	Cold shock domain containing E1, RNA-binding.	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit.	0.411
CSDE1	ENSOMEP00000027927	ENSOMEP00000031024	ENSOMEP00000027927	Cold shock domain containing E1, RNA-binding.	Ubiquitin-like domain-containing protein.	0.491
CSDE1	ENSOMEP00000035400	ENSOMEP00000031024	ENSOMEP00000035400	Cold shock domain containing E1, RNA-binding.	Ubiquitin-like domain-containing protein.	0.686
CSDE1	LOC112146278	ENSOMEP00000031024	ENSOMEP00000016922	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.661
CSDE1	LOC112152089	ENSOMEP00000031024	ENSOMEP00000021120	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase.	0.553
CSDE1	PEBP4	ENSOMEP00000031024	ENSOMEP00000007694	Cold shock domain containing E1, RNA-binding.	Phosphatidylethanolamine binding protein 4.	0.667
CSDE1	araf	ENSOMEP00000031024	ENSOMEP00000035475	Cold shock domain containing E1, RNA-binding.	A-Raf proto-oncogene, serine/threonine kinase.	0.883
CSDE1	braf	ENSOMEP00000031024	ENSOMEP00000003708	Cold shock domain containing E1, RNA-binding.	B-Raf proto-oncogene, serine/threonine kinase.	0.883
CSDE1	brap	ENSOMEP00000031024	ENSOMEP00000035886	Cold shock domain containing E1, RNA-binding.	BRCA1 associated protein.	0.722
CSDE1	map2k1	ENSOMEP00000031024	ENSOMEP00000019445	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily.	0.790
CSDE1	map2k2	ENSOMEP00000031024	ENSOMEP00000024311	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily.	0.790
CSDE1	mapk1	ENSOMEP00000031024	ENSOMEP00000008061	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.661
CSDE1	mark3	ENSOMEP00000031024	ENSOMEP00000002934	Cold shock domain containing E1, RNA-binding.	Non-specific serine/threonine protein kinase.	0.451
CSDE1	pebp1	ENSOMEP00000031024	ENSOMEP00000028863	Cold shock domain containing E1, RNA-binding.	Phosphatidylethanolamine binding protein 1.	0.710
CSDE1	ppp2ca	ENSOMEP00000031024	ENSOMEP00000023461	Cold shock domain containing E1, RNA-binding.	Serine/threonine-protein phosphatase.	0.580
CSDE1	ppp2cb	ENSOMEP00000031024	ENSOMEP00000027023	Cold shock domain containing E1, RNA-binding.	Serine/threonine-protein phosphatase.	0.580