STRINGSTRING
xpc xpc RAD23B RAD23B cops5 cops5 tfpt tfpt cops3 cops3 wdr76 wdr76 LOC112138175 LOC112138175 LOC112138173 LOC112138173 ino80e ino80e ENSOMEP00000014615 ENSOMEP00000014615 ino80b ino80b cops8 cops8 YY1 YY1 nfrkb nfrkb LOC112156383 LOC112156383 mcrs1 mcrs1 vwa5b2 vwa5b2 ENSOMEP00000020858 ENSOMEP00000020858 ENSOMEP00000020966 ENSOMEP00000020966 cetn3 cetn3 ENSOMEP00000021553 ENSOMEP00000021553 ino80 ino80 rbx1 rbx1 actr5 actr5 LOC112145411 LOC112145411 cops2 cops2 ENSOMEP00000027295 ENSOMEP00000027295 kxd1 kxd1 ENSOMEP00000027514 ENSOMEP00000027514 ENSOMEP00000027927 ENSOMEP00000027927 ENSOMEP00000028097 ENSOMEP00000028097 COPS6 COPS6 parp3 parp3 COPS7B COPS7B cul4b cul4b cops4 cops4 ENSOMEP00000033367 ENSOMEP00000033367 ddb2 ddb2 LOC112137204 LOC112137204 ENSOMEP00000035400 ENSOMEP00000035400 gps1 gps1 LOC112151659 LOC112151659 ENSOMEP00000002833 ENSOMEP00000002833 ino80c ino80c actb actb ENSOMEP00000004465 ENSOMEP00000004465 ENSOMEP00000005155 ENSOMEP00000005155 LOC112157444 LOC112157444 actr8 actr8 ENSOMEP00000006733 ENSOMEP00000006733 ENSOMEP00000006747 ENSOMEP00000006747
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xpcXeroderma pigmentosum, complementation group C. (895 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (395 aa)
cops5COP9 signalosome subunit 5. (334 aa)
tfptTCF3 (E2A) fusion partner. (195 aa)
cops3COP9 signalosome subunit 3. (559 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (595 aa)
LOC112138175Uncharacterized protein. (375 aa)
LOC112138173Uncharacterized protein. (377 aa)
ino80eINO80 complex subunit E. (245 aa)
ENSOMEP00000014615Cullin 4A; Belongs to the cullin family. (760 aa)
ino80bINO80 complex subunit B. (338 aa)
cops8COP9 signalosome subunit 8. (192 aa)
YY1YY1 transcription factor b. (391 aa)
nfrkbNuclear factor related to kappaB binding protein. (1274 aa)
LOC112156383Si:ch73-290k24.6. (761 aa)
mcrs1Microspherule protein 1. (461 aa)
vwa5b2Von Willebrand factor A domain containing 5B2. (1396 aa)
ENSOMEP00000020858Poly [ADP-ribose] polymerase. (610 aa)
ENSOMEP00000020966Ribosomal protein S27a. (183 aa)
cetn3Centrin 3. (194 aa)
ENSOMEP00000021553TPR_REGION domain-containing protein. (224 aa)
ino80INO80 complex ATPase subunit. (1558 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
actr5Actin related protein 5; Belongs to the actin family. (625 aa)
LOC112145411Uncharacterized protein. (349 aa)
cops2COP9 signalosome subunit 2. (443 aa)
ENSOMEP00000027295Si:cabz01080528.1. (644 aa)
kxd1KxDL motif containing 1. (195 aa)
ENSOMEP00000027514RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (451 aa)
ENSOMEP00000027927Ubiquitin-like domain-containing protein. (77 aa)
ENSOMEP00000028097Uncharacterized protein. (393 aa)
COPS6COP9 signalosome subunit 6. (323 aa)
parp3Poly [ADP-ribose] polymerase. (530 aa)
COPS7BCOP9 signalosome subunit 7B. (291 aa)
cul4bCullin 4B; Belongs to the cullin family. (864 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
ENSOMEP00000033367RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (85 aa)
ddb2Damage-specific DNA binding protein 2. (476 aa)
LOC112137204Actin, beta 1. (375 aa)
ENSOMEP00000035400Ubiquitin-like domain-containing protein. (137 aa)
gps1G protein pathway suppressor 1. (487 aa)
LOC112151659Centrin 4. (171 aa)
ENSOMEP00000002833Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
ino80cINO80 complex subunit C. (197 aa)
actbActin beta. (375 aa)
ENSOMEP00000004465INO80 complex subunit Da. (1013 aa)
ENSOMEP00000005155Damage-specific DNA binding protein 1. (1105 aa)
LOC112157444Uncharacterized protein. (506 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (642 aa)
ENSOMEP00000006733PARP-type domain-containing protein. (104 aa)
ENSOMEP00000006747Poly [ADP-ribose] polymerase. (395 aa)
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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