STRINGSTRING
LOC112153984 LOC112153984 LOC112150438 LOC112150438 tceanc tceanc gtf2h5 gtf2h5 ENSOMEP00000009552 ENSOMEP00000009552 RPA1 RPA1 ENSOMEP00000010830 ENSOMEP00000010830 RCBTB1 RCBTB1 ENSOMEP00000011219 ENSOMEP00000011219 polr2i polr2i LOC112148474 LOC112148474 ENSOMEP00000011934 ENSOMEP00000011934 usp40 usp40 LOC112159719 LOC112159719 ENSOMEP00000012865 ENSOMEP00000012865 LOC112146405 LOC112146405 pole2 pole2 rfc4 rfc4 ENSOMEP00000014615 ENSOMEP00000014615 ENSOMEP00000014790 ENSOMEP00000014790 pold1 pold1 ENSOMEP00000015209 ENSOMEP00000015209 ENSOMEP00000015229 ENSOMEP00000015229 gtf2h1 gtf2h1 polr2g polr2g uvssa uvssa polr2l polr2l polr2h polr2h ercc8 ercc8 ENSOMEP00000020966 ENSOMEP00000020966 ercc2 ercc2 ENSOMEP00000021808 ENSOMEP00000021808 gtf2h3 gtf2h3 ENSOMEP00000023320 ENSOMEP00000023320 prpf19 prpf19 cdk7 cdk7 rbx1 rbx1 ENSOMEP00000035400 ENSOMEP00000035400 ENSOMEP00000034450 ENSOMEP00000034450 polr2c polr2c polr2d polr2d pcna pcna rpa2 rpa2 ercc3 ercc3 cul4b cul4b ppie ppie aqr aqr tceanc2 tceanc2 rfc2 rfc2 ENSOMEP00000028916 ENSOMEP00000028916 ENSOMEP00000028815 ENSOMEP00000028815 ENSOMEP00000028590 ENSOMEP00000028590 nrde2 nrde2 ENSOMEP00000027927 ENSOMEP00000027927 tcea1 tcea1 ENSOMEP00000027875 ENSOMEP00000027875 kxd1 kxd1 pole4 pole4 ercc4 ercc4 rpa3 rpa3 ENSOMEP00000025354 ENSOMEP00000025354 ccnh ccnh xab2 xab2 ercc1 ercc1 ENSOMEP00000000773 ENSOMEP00000000773 rcbtb2 rcbtb2 polr2j polr2j ENSOMEP00000001450 ENSOMEP00000001450 pold3 pold3 POLR2E POLR2E pole pole LOC112137766 LOC112137766 pole3 pole3 ENSOMEP00000002833 ENSOMEP00000002833 rpa1 rpa1 LOC112146043 LOC112146043 polk polk ZNF830 ZNF830 ENSOMEP00000005155 ENSOMEP00000005155 mnat1 mnat1 meiob meiob xpa xpa ENSOMEP00000006794 ENSOMEP00000006794 LOC112159947 LOC112159947 gtf2h4 gtf2h4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC112153984E1A binding protein p300 a. (2690 aa)
LOC112150438SCY domain-containing protein. (126 aa)
tceancTFIIS central domain-containing protein. (311 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
ENSOMEP00000009552Transcription elongation factor A (SII), 3. (383 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (649 aa)
ENSOMEP00000010830Replication factor C (activator 1) 5. (326 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (527 aa)
ENSOMEP00000011219Uncharacterized protein. (96 aa)
polr2iPolymerase (RNA) II (DNA directed) polypeptide I. (137 aa)
LOC112148474Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
ENSOMEP00000011934Uncharacterized protein. (67 aa)
usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1275 aa)
LOC112159719Transcription elongation factor A (SII), 2. (309 aa)
ENSOMEP00000012865Uncharacterized protein. (281 aa)
LOC112146405ATPase family AAA domain containing 5a. (1739 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
rfc4Replication factor C (activator 1) 4. (355 aa)
ENSOMEP00000014615Cullin 4A; Belongs to the cullin family. (760 aa)
ENSOMEP00000014790Uncharacterized protein. (272 aa)
pold1DNA polymerase. (1105 aa)
ENSOMEP00000015209XPGI domain-containing protein. (382 aa)
ENSOMEP00000015229XPGN domain-containing protein. (301 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
uvssaUV-stimulated scaffold protein A. (762 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (68 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ercc8Excision repair cross-complementation group 8. (401 aa)
ENSOMEP00000020966Ribosomal protein S27a. (183 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
ENSOMEP00000021808ISY1 splicing factor homolog. (281 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (300 aa)
ENSOMEP00000023320Basic, immunoglobulin-like variable motif containing. (493 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
ENSOMEP00000035400Ubiquitin-like domain-containing protein. (137 aa)
ENSOMEP00000034450Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1117 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
rpa2Replication protein A2. (270 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
cul4bCullin 4B; Belongs to the cullin family. (864 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
aqrAquarius intron-binding spliceosomal factor. (1469 aa)
tceanc2Uncharacterized protein. (206 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
ENSOMEP00000028916Replication factor C subunit 1. (1042 aa)
ENSOMEP00000028815Replication factor C (activator 1) 3. (279 aa)
ENSOMEP00000028590Uncharacterized protein. (106 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1199 aa)
ENSOMEP00000027927Ubiquitin-like domain-containing protein. (77 aa)
tcea1Transcription elongation factor A (SII), 1. (311 aa)
ENSOMEP00000027875DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1628 aa)
kxd1KxDL motif containing 1. (195 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (148 aa)
ercc4Excision repair cross-complementation group 4. (917 aa)
rpa3Replication protein A3. (122 aa)
ENSOMEP00000025354Polymerase (RNA) II (DNA directed) polypeptide F. (169 aa)
ccnhCyclin H; Belongs to the cyclin family. (326 aa)
xab2XPA binding protein 2. (848 aa)
ercc1Excision repair cross-complementation group 1. (403 aa)
ENSOMEP00000000773PHD finger protein 3. (1573 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (547 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
ENSOMEP00000001450Excision repair cross-complementation group 6. (1379 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (438 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2291 aa)
LOC112137766General transcription factor IIH subunit. (392 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (147 aa)
ENSOMEP00000002833Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (598 aa)
LOC112146043E1A binding protein p300 b. (2771 aa)
polkPolymerase (DNA directed) kappa. (847 aa)
ZNF830Zinc finger protein 830. (323 aa)
ENSOMEP00000005155Damage-specific DNA binding protein 1. (1105 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
meiobMethionine sulfoxide reductase B1b. (461 aa)
xpaXeroderma pigmentosum, complementation group A. (275 aa)
ENSOMEP00000006794DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1244 aa)
LOC112159947Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (573 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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