42 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nutf2	Nuclear transport factor 2. (127 aa)
	LOC112162145	NTF2 domain-containing protein. (129 aa)
	fanci	FA complementation group I. (1323 aa)
	ENSOMEP00000010103	UBZ_FAAP20 domain-containing protein. (137 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (649 aa)
	ENSOMEP00000007258	Ubiquitin carboxyl-terminal hydrolase. (784 aa)
	atrip	Uncharacterized protein. (739 aa)
	meiob	Methionine sulfoxide reductase B1b. (461 aa)
	FAAP100	Uncharacterized protein. (827 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (598 aa)
	ENSOMEP00000003105	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (856 aa)
	ENSOMEP00000002833	Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
	ENSOMEP00000002422	MUS81 structure-specific endonuclease subunit. (514 aa)
	ercc1	Excision repair cross-complementation group 1. (403 aa)
	fancl	FA complementation group L. (378 aa)
	LOC112156448	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (276 aa)
	slx4	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae). (1506 aa)
	fancb	FA complementation group B. (857 aa)
	rpa3	Replication protein A3. (122 aa)
	ercc4	Excision repair cross-complementation group 4. (917 aa)
	cenpx	Centromere protein X. (106 aa)
	kxd1	KxDL motif containing 1. (195 aa)
	ENSOMEP00000027927	Ubiquitin-like domain-containing protein. (77 aa)
	fancm	Uncharacterized protein. (1898 aa)
	ENSOMEP00000028578	FA complementation group D2. (1400 aa)
	wdr48	WD repeat domain 48b. (677 aa)
	poln	Polymerase (DNA directed) nu. (1171 aa)
	proser1	Proline and serine rich 1. (775 aa)
	ENSOMEP00000031192	Uncharacterized protein. (116 aa)
	fancf	FA complementation group F. (344 aa)
	ENSOMEP00000035400	Ubiquitin-like domain-containing protein. (137 aa)
	faap24	FA core complex associated protein 24. (209 aa)
	eme1	Essential meiotic structure-specific endonuclease 1. (498 aa)
	rpa2	Replication protein A2. (270 aa)
	fan1	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (940 aa)
	eme2	ERCC4 domain-containing protein. (429 aa)
	dclre1b	DNA cross-link repair 1B. (577 aa)
	ENSOMEP00000020292	FA complementation group C. (591 aa)
	ENSOMEP00000020966	Ribosomal protein S27a. (183 aa)
	FANCG	FA complementation group G. (607 aa)
	ENSOMEP00000013247	Ubiquitin-conjugating enzyme E2T (putative). (186 aa)
	ENSOMEP00000012865	Uncharacterized protein. (281 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000002422	ENSOMEP00000003105	ENSOMEP00000002422	ENSOMEP00000003105	MUS81 structure-specific endonuclease subunit.	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae).	0.856
ENSOMEP00000002422	ENSOMEP00000007258	ENSOMEP00000002422	ENSOMEP00000007258	MUS81 structure-specific endonuclease subunit.	Ubiquitin carboxyl-terminal hydrolase.	0.657
ENSOMEP00000002422	ENSOMEP00000010103	ENSOMEP00000002422	ENSOMEP00000010103	MUS81 structure-specific endonuclease subunit.	UBZ_FAAP20 domain-containing protein.	0.658
ENSOMEP00000002422	ENSOMEP00000012865	ENSOMEP00000002422	ENSOMEP00000012865	MUS81 structure-specific endonuclease subunit.	Uncharacterized protein.	0.962
ENSOMEP00000002422	ENSOMEP00000013247	ENSOMEP00000002422	ENSOMEP00000013247	MUS81 structure-specific endonuclease subunit.	Ubiquitin-conjugating enzyme E2T (putative).	0.708
ENSOMEP00000002422	ENSOMEP00000020292	ENSOMEP00000002422	ENSOMEP00000020292	MUS81 structure-specific endonuclease subunit.	FA complementation group C.	0.931
ENSOMEP00000002422	ENSOMEP00000020966	ENSOMEP00000002422	ENSOMEP00000020966	MUS81 structure-specific endonuclease subunit.	Ribosomal protein S27a.	0.693
ENSOMEP00000002422	ENSOMEP00000027927	ENSOMEP00000002422	ENSOMEP00000027927	MUS81 structure-specific endonuclease subunit.	Ubiquitin-like domain-containing protein.	0.675
ENSOMEP00000002422	ENSOMEP00000028578	ENSOMEP00000002422	ENSOMEP00000028578	MUS81 structure-specific endonuclease subunit.	FA complementation group D2.	0.869
ENSOMEP00000002422	ENSOMEP00000031192	ENSOMEP00000002422	ENSOMEP00000031192	MUS81 structure-specific endonuclease subunit.	Uncharacterized protein.	0.895
ENSOMEP00000002422	ENSOMEP00000035400	ENSOMEP00000002422	ENSOMEP00000035400	MUS81 structure-specific endonuclease subunit.	Ubiquitin-like domain-containing protein.	0.694
ENSOMEP00000002422	FAAP100	ENSOMEP00000002422	ENSOMEP00000005039	MUS81 structure-specific endonuclease subunit.	Uncharacterized protein.	0.856
ENSOMEP00000002422	FANCG	ENSOMEP00000002422	ENSOMEP00000023967	MUS81 structure-specific endonuclease subunit.	FA complementation group G.	0.933
ENSOMEP00000002422	LOC112156448	ENSOMEP00000002422	ENSOMEP00000024456	MUS81 structure-specific endonuclease subunit.	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.	0.918
ENSOMEP00000002422	LOC112162145	ENSOMEP00000002422	ENSOMEP00000011721	MUS81 structure-specific endonuclease subunit.	NTF2 domain-containing protein.	0.831
ENSOMEP00000002422	RPA1	ENSOMEP00000002422	ENSOMEP00000009748	MUS81 structure-specific endonuclease subunit.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.887
ENSOMEP00000002422	atrip	ENSOMEP00000002422	ENSOMEP00000006805	MUS81 structure-specific endonuclease subunit.	Uncharacterized protein.	0.719
ENSOMEP00000002422	cenpx	ENSOMEP00000002422	ENSOMEP00000026795	MUS81 structure-specific endonuclease subunit.	Centromere protein X.	0.722
ENSOMEP00000002422	dclre1b	ENSOMEP00000002422	ENSOMEP00000018773	MUS81 structure-specific endonuclease subunit.	DNA cross-link repair 1B.	0.848
ENSOMEP00000002422	eme1	ENSOMEP00000002422	ENSOMEP00000032819	MUS81 structure-specific endonuclease subunit.	Essential meiotic structure-specific endonuclease 1.	0.993