37 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSOMEP00000020614	Uncharacterized protein. (400 aa)
	marchf4	Membrane-associated ring finger (C3HC4) 4. (395 aa)
	edem1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (641 aa)
	ENSOMEP00000002833	Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
	marchf8	Membrane-associated ring finger (C3HC4) 8. (278 aa)
	edem3	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (886 aa)
	ENSOMEP00000006838	Calreticulin. (414 aa)
	MARCHF6	Membrane associated ring-CH-type finger 6. (915 aa)
	ENSOMEP00000011258	Thioredoxin_12 domain-containing protein. (261 aa)
	ENSOMEP00000011276	Uncharacterized protein. (391 aa)
	LOC112147314	RING-CH-type domain-containing protein. (924 aa)
	edem2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (606 aa)
	LOC112147613	RING-CH-type domain-containing protein. (248 aa)
	ganab	Glucosidase, alpha; neutral AB; Belongs to the glycosyl hydrolase 31 family. (944 aa)
	MARCHF9	Membrane associated ring-CH-type finger 9. (337 aa)
	canx	Calnexin. (604 aa)
	ENSOMEP00000020966	Ribosomal protein S27a. (183 aa)
	LOC112162819	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (832 aa)
	man1b1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (634 aa)
	LOC112150495	Membrane-associated ring finger (C3HC4) 2. (248 aa)
	ENSOMEP00000023088	Membrane-associated ring finger (C3HC4) 1. (556 aa)
	pdia3	Protein disulfide-isomerase. (490 aa)
	ENSOMEP00000025056	UDP-glucose glycoprotein glucosyltransferase 2. (1483 aa)
	kxd1	KxDL motif containing 1. (195 aa)
	LOC112150092	Calreticulin. (425 aa)
	ENSOMEP00000027927	Ubiquitin-like domain-containing protein. (77 aa)
	rnf103	Ring finger protein 103. (634 aa)
	ENSOMEP00000029149	Glyco_transf_24 domain-containing protein. (111 aa)
	ENSOMEP00000029153	Calreticulin. (366 aa)
	rnf139	Ring finger protein 139. (702 aa)
	pdia4	Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family. (640 aa)
	LOC112159346	Membrane-associated ring finger (C3HC4) 9. (341 aa)
	ENSOMEP00000030608	Membrane-associated ring finger (C3HC4) 7. (759 aa)
	LOC112162853	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (677 aa)
	marchf11	Membrane-associated ring finger (C3HC4) 11. (318 aa)
	LOC112157046	Calmegin. (649 aa)
	ENSOMEP00000035400	Ubiquitin-like domain-containing protein. (137 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000002833	ENSOMEP00000020966	ENSOMEP00000002833	ENSOMEP00000020966	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.999
ENSOMEP00000002833	ENSOMEP00000027927	ENSOMEP00000002833	ENSOMEP00000027927	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like domain-containing protein.	0.989
ENSOMEP00000002833	ENSOMEP00000035400	ENSOMEP00000002833	ENSOMEP00000035400	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like domain-containing protein.	0.999
ENSOMEP00000002833	kxd1	ENSOMEP00000002833	ENSOMEP00000027436	Ubiquitin A-52 residue ribosomal protein fusion product 1.	KxDL motif containing 1.	0.779
ENSOMEP00000002833	rnf103	ENSOMEP00000002833	ENSOMEP00000028286	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ring finger protein 103.	0.765
ENSOMEP00000002833	rnf139	ENSOMEP00000002833	ENSOMEP00000029333	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ring finger protein 139.	0.787
ENSOMEP00000006838	LOC112150092	ENSOMEP00000006838	ENSOMEP00000027753	Calreticulin.	Calreticulin.	0.791
ENSOMEP00000006838	LOC112157046	ENSOMEP00000006838	ENSOMEP00000034981	Calreticulin.	Calmegin.	0.894
ENSOMEP00000006838	canx	ENSOMEP00000006838	ENSOMEP00000020522	Calreticulin.	Calnexin.	0.894
ENSOMEP00000006838	ganab	ENSOMEP00000006838	ENSOMEP00000017480	Calreticulin.	Glucosidase, alpha; neutral AB; Belongs to the glycosyl hydrolase 31 family.	0.636
ENSOMEP00000006838	pdia3	ENSOMEP00000006838	ENSOMEP00000023706	Calreticulin.	Protein disulfide-isomerase.	0.956
ENSOMEP00000006838	pdia4	ENSOMEP00000006838	ENSOMEP00000029391	Calreticulin.	Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family.	0.916
ENSOMEP00000011258	ENSOMEP00000011276	ENSOMEP00000011258	ENSOMEP00000011276	Thioredoxin_12 domain-containing protein.	Uncharacterized protein.	0.668
ENSOMEP00000011258	ENSOMEP00000025056	ENSOMEP00000011258	ENSOMEP00000025056	Thioredoxin_12 domain-containing protein.	UDP-glucose glycoprotein glucosyltransferase 2.	0.864
ENSOMEP00000011258	LOC112157046	ENSOMEP00000011258	ENSOMEP00000034981	Thioredoxin_12 domain-containing protein.	Calmegin.	0.589
ENSOMEP00000011258	canx	ENSOMEP00000011258	ENSOMEP00000020522	Thioredoxin_12 domain-containing protein.	Calnexin.	0.589
ENSOMEP00000011258	edem1	ENSOMEP00000011258	ENSOMEP00000001092	Thioredoxin_12 domain-containing protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.442
ENSOMEP00000011258	edem2	ENSOMEP00000011258	ENSOMEP00000014341	Thioredoxin_12 domain-containing protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.471
ENSOMEP00000011258	ganab	ENSOMEP00000011258	ENSOMEP00000017480	Thioredoxin_12 domain-containing protein.	Glucosidase, alpha; neutral AB; Belongs to the glycosyl hydrolase 31 family.	0.695
ENSOMEP00000011276	ENSOMEP00000011258	ENSOMEP00000011276	ENSOMEP00000011258	Uncharacterized protein.	Thioredoxin_12 domain-containing protein.	0.668