65 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSOMEP00000011333	P21 protein (Cdc42/Rac)-activated kinase 2b; Belongs to the protein kinase superfamily. (429 aa)
	TPM4	Tropomyosin 4; Belongs to the tropomyosin family. (232 aa)
	map3k10	Mitogen-activated protein kinase kinase kinase. (1085 aa)
	LOC112143725	Uncharacterized protein. (191 aa)
	LOC112141239	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2366 aa)
	LOC112158041	P21 protein (Cdc42/Rac)-activated kinase 6b. (604 aa)
	ENSOMEP00000013440	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2326 aa)
	ENSOMEP00000013532	Uncharacterized protein. (98 aa)
	ENSOMEP00000014073	Uncharacterized protein. (62 aa)
	VANGL1	Vang-like protein. (515 aa)
	pak1	Non-specific serine/threonine protein kinase. (568 aa)
	LOC112158426	Ras homolog family member V. (286 aa)
	nck1	Cytoplasmic protein. (409 aa)
	ENSOMEP00000026664	Calponin-homology (CH) domain-containing protein. (165 aa)
	LOC112138531	Eph receptor A2 b. (994 aa)
	ENSOMEP00000025822	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2540 aa)
	LOC112139281	Uncharacterized protein. (176 aa)
	pak4	Non-specific serine/threonine protein kinase. (653 aa)
	TPM1	Tropomyosin 1; Belongs to the tropomyosin family. (284 aa)
	ENSOMEP00000035424	Mitogen-activated protein kinase kinase kinase 9. (775 aa)
	LOC112152883	Par-6 family cell polarity regulator alpha. (389 aa)
	ENSOMEP00000033157	Uncharacterized protein. (87 aa)
	ENSOMEP00000029915	FH2 domain-containing protein. (375 aa)
	LOC112137385	Uncharacterized protein. (932 aa)
	ENSOMEP00000029180	CRIB domain-containing protein. (98 aa)
	LOC112160715	Alpha-tropomyosin; Belongs to the tropomyosin family. (284 aa)
	ENSOMEP00000028795	Par-6 partitioning defective 6 homolog beta (C. elegans). (377 aa)
	ENSOMEP00000000256	Uncharacterized protein. (628 aa)
	PAK3	Non-specific serine/threonine protein kinase. (576 aa)
	git2	G protein-coupled receptor kinase interacting ArfGAP 2a. (728 aa)
	lap3	Leucine aminopeptidase 3. (515 aa)
	was	Uncharacterized protein. (528 aa)
	txnl1	Thioredoxin-like 1. (289 aa)
	LOC112155969	Mitogen-activated protein kinase kinase kinase. (1040 aa)
	CDC42	Cell division cycle 42. (191 aa)
	peak1	Pseudopodium-enriched atypical kinase 1. (1880 aa)
	LOC112161477	Discs, large homolog 5a (Drosophila); Belongs to the MAGUK family. (2016 aa)
	ENSOMEP00000004374	TNNI3 interacting kinase. (618 aa)
	wdr6	WD repeat domain 6. (1315 aa)
	git1	G protein-coupled receptor kinase interacting ArfGAP 1. (778 aa)
	ENSOMEP00000007492	Si:zfos-1837d3.1. (184 aa)
	ENSOMEP00000007507	Uncharacterized protein. (585 aa)
	tpm3	Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)
	arhgef7	Rho guanine nucleotide exchange factor (GEF) 7a. (800 aa)
	ENSOMEP00000028145	WH1 domain-containing protein. (188 aa)
	LOC112161552	Mitogen-activated protein kinase kinase kinase. (993 aa)
	ccp110	Uncharacterized protein. (797 aa)
	tpm4	Tropomyosin 4a; Belongs to the tropomyosin family. (284 aa)
	PAK2	Non-specific serine/threonine protein kinase. (512 aa)
	sh3rf1	SH3 domain containing ring finger 1. (877 aa)
	LOC112137131	Uncharacterized protein. (191 aa)
	znf512	Zinc finger protein 512. (802 aa)
	FMN1	Formin 1. (1117 aa)
	ENSOMEP00000018579	Uncharacterized protein. (469 aa)
	sh3rf3	SH3 domain containing ring finger 3. (817 aa)
	LOC112144774	Cell division cycle 42. (191 aa)
	SPTBN1	Spectrin beta, non-erythrocytic 1. (850 aa)
	epha2	Eph receptor A2 a. (997 aa)
	LOC112163091	G protein-coupled receptor kinase interacting ArfGAP 2b. (736 aa)
	LOC112138373	Rho guanine nucleotide exchange factor (GEF) 7b. (843 aa)
	ENSOMEP00000008609	FH2 domain-containing protein. (351 aa)
	cep97	Centrosomal protein 97. (754 aa)
	nck2	Cytoplasmic protein. (398 aa)
	depdc1b	Rho-GAP domain-containing protein. (533 aa)
	ZNF512B	Zinc finger protein 512B. (757 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSOMEP00000004374	ENSOMEP00000003168	ENSOMEP00000004374	Cell division cycle 42.	TNNI3 interacting kinase.	0.736
CDC42	ENSOMEP00000008609	ENSOMEP00000003168	ENSOMEP00000008609	Cell division cycle 42.	FH2 domain-containing protein.	0.601
CDC42	ENSOMEP00000011333	ENSOMEP00000003168	ENSOMEP00000011333	Cell division cycle 42.	P21 protein (Cdc42/Rac)-activated kinase 2b; Belongs to the protein kinase superfamily.	0.955
CDC42	ENSOMEP00000013440	ENSOMEP00000003168	ENSOMEP00000013440	Cell division cycle 42.	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family.	0.497
CDC42	ENSOMEP00000013532	ENSOMEP00000003168	ENSOMEP00000013532	Cell division cycle 42.	Uncharacterized protein.	0.497
CDC42	ENSOMEP00000014073	ENSOMEP00000003168	ENSOMEP00000014073	Cell division cycle 42.	Uncharacterized protein.	0.466
CDC42	ENSOMEP00000018579	ENSOMEP00000003168	ENSOMEP00000018579	Cell division cycle 42.	Uncharacterized protein.	0.617
CDC42	ENSOMEP00000025822	ENSOMEP00000003168	ENSOMEP00000025822	Cell division cycle 42.	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.821
CDC42	ENSOMEP00000028145	ENSOMEP00000003168	ENSOMEP00000028145	Cell division cycle 42.	WH1 domain-containing protein.	0.939
CDC42	ENSOMEP00000028795	ENSOMEP00000003168	ENSOMEP00000028795	Cell division cycle 42.	Par-6 partitioning defective 6 homolog beta (C. elegans).	0.977
CDC42	ENSOMEP00000029180	ENSOMEP00000003168	ENSOMEP00000029180	Cell division cycle 42.	CRIB domain-containing protein.	0.875
CDC42	ENSOMEP00000029915	ENSOMEP00000003168	ENSOMEP00000029915	Cell division cycle 42.	FH2 domain-containing protein.	0.601
CDC42	ENSOMEP00000033157	ENSOMEP00000003168	ENSOMEP00000033157	Cell division cycle 42.	Uncharacterized protein.	0.601
CDC42	ENSOMEP00000035424	ENSOMEP00000003168	ENSOMEP00000035424	Cell division cycle 42.	Mitogen-activated protein kinase kinase kinase 9.	0.736
CDC42	FMN1	ENSOMEP00000003168	ENSOMEP00000017328	Cell division cycle 42.	Formin 1.	0.601
CDC42	LOC112137131	ENSOMEP00000003168	ENSOMEP00000014906	Cell division cycle 42.	Uncharacterized protein.	0.628
CDC42	LOC112138373	ENSOMEP00000003168	ENSOMEP00000008408	Cell division cycle 42.	Rho guanine nucleotide exchange factor (GEF) 7b.	0.821
CDC42	LOC112138531	ENSOMEP00000003168	ENSOMEP00000026088	Cell division cycle 42.	Eph receptor A2 b.	0.653
CDC42	LOC112139281	ENSOMEP00000003168	ENSOMEP00000036040	Cell division cycle 42.	Uncharacterized protein.	0.628
CDC42	LOC112141239	ENSOMEP00000003168	ENSOMEP00000012155	Cell division cycle 42.	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.821