43 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC112151024	Charged multivesicular body protein 5b. (220 aa)
	vta1	Vesicle (multivesicular body) trafficking 1. (321 aa)
	ENSOMEP00000001140	Si:ch211-284f22.3. (303 aa)
	LOC112151790	Tumor susceptibility 101a. (384 aa)
	ubap1	Ubiquitin associated protein 1. (463 aa)
	vps37b	Zgc:114173. (280 aa)
	chmp2a	Charged multivesicular body protein 2A. (220 aa)
	LOC112151226	Charged multivesicular body protein 4C. (230 aa)
	ENSOMEP00000002833	Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
	VPS4B	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (415 aa)
	ENSOMEP00000002955	MIT domain-containing protein. (86 aa)
	vps25	Vacuolar protein sorting 25 homolog. (246 aa)
	LOC112137566	Uncharacterized protein. (323 aa)
	LOC112146985	Charged multivesicular body protein 6a. (207 aa)
	LOC112147540	Charged multivesicular body protein 5a. (220 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (515 aa)
	vps28	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (256 aa)
	ENSOMEP00000013049	Zgc:153240. (364 aa)
	LOC112147885	Multivesicular body subunit 12Bb. (247 aa)
	chmp6	Charged multivesicular body protein 6. (202 aa)
	vps36	Vacuolar protein sorting 36 homolog. (382 aa)
	LOC112152295	Uncharacterized protein. (379 aa)
	stam2	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2. (505 aa)
	zfyve19	Zinc finger, FYVE domain containing 19. (427 aa)
	LOC112149299	Si:ch211-11n16.2. (652 aa)
	ZFYVE1	Uncharacterized protein. (786 aa)
	ENSOMEP00000020966	Ribosomal protein S27a. (183 aa)
	ENSOMEP00000021830	Uncharacterized protein. (312 aa)
	snf8	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (257 aa)
	ENSOMEP00000023638	Zinc finger, FYVE domain containing 1. (687 aa)
	chmp4b	Charged multivesicular body protein 4Bb. (222 aa)
	chmp3	Charged multivesicular body protein 3. (220 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (768 aa)
	vps37a	VPS37A subunit of ESCRT-I. (395 aa)
	kxd1	KxDL motif containing 1. (195 aa)
	ENSOMEP00000027927	Ubiquitin-like domain-containing protein. (77 aa)
	LOC112136919	Uncharacterized protein; Belongs to the AAA ATPase family. (455 aa)
	LOC112137583	VPS37C subunit of ESCRT-I. (363 aa)
	tm9sf1	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (594 aa)
	LOC112163121	Multivesicular body subunit 12Ba. (294 aa)
	ENSOMEP00000035909	Charged multivesicular body protein 2Bb. (221 aa)
	ENSOMEP00000035400	Ubiquitin-like domain-containing protein. (137 aa)
	LOC112152805	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000001140	ENSOMEP00000013049	ENSOMEP00000001140	ENSOMEP00000013049	Si:ch211-284f22.3.	Zgc:153240.	0.664
ENSOMEP00000001140	ENSOMEP00000021830	ENSOMEP00000001140	ENSOMEP00000021830	Si:ch211-284f22.3.	Uncharacterized protein.	0.627
ENSOMEP00000001140	ENSOMEP00000023638	ENSOMEP00000001140	ENSOMEP00000023638	Si:ch211-284f22.3.	Zinc finger, FYVE domain containing 1.	0.569
ENSOMEP00000001140	ENSOMEP00000035909	ENSOMEP00000001140	ENSOMEP00000035909	Si:ch211-284f22.3.	Charged multivesicular body protein 2Bb.	0.695
ENSOMEP00000001140	LOC112137566	ENSOMEP00000001140	ENSOMEP00000004786	Si:ch211-284f22.3.	Uncharacterized protein.	0.945
ENSOMEP00000001140	LOC112137583	ENSOMEP00000001140	ENSOMEP00000030397	Si:ch211-284f22.3.	VPS37C subunit of ESCRT-I.	0.854
ENSOMEP00000001140	LOC112146985	ENSOMEP00000001140	ENSOMEP00000006645	Si:ch211-284f22.3.	Charged multivesicular body protein 6a.	0.664
ENSOMEP00000001140	LOC112147885	ENSOMEP00000001140	ENSOMEP00000013114	Si:ch211-284f22.3.	Multivesicular body subunit 12Bb.	0.940
ENSOMEP00000001140	LOC112149299	ENSOMEP00000001140	ENSOMEP00000016959	Si:ch211-284f22.3.	Si:ch211-11n16.2.	0.569
ENSOMEP00000001140	LOC112151226	ENSOMEP00000001140	ENSOMEP00000002739	Si:ch211-284f22.3.	Charged multivesicular body protein 4C.	0.627
ENSOMEP00000001140	LOC112151790	ENSOMEP00000001140	ENSOMEP00000033034	Si:ch211-284f22.3.	Tumor susceptibility 101a.	0.927
ENSOMEP00000001140	LOC112152295	ENSOMEP00000001140	ENSOMEP00000014893	Si:ch211-284f22.3.	Uncharacterized protein.	0.499
ENSOMEP00000001140	LOC112163121	ENSOMEP00000001140	ENSOMEP00000032447	Si:ch211-284f22.3.	Multivesicular body subunit 12Ba.	0.940
ENSOMEP00000001140	ZFYVE1	ENSOMEP00000001140	ENSOMEP00000018023	Si:ch211-284f22.3.	Uncharacterized protein.	0.569
ENSOMEP00000001140	chmp2a	ENSOMEP00000001140	ENSOMEP00000002571	Si:ch211-284f22.3.	Charged multivesicular body protein 2A.	0.766
ENSOMEP00000001140	chmp3	ENSOMEP00000001140	ENSOMEP00000024997	Si:ch211-284f22.3.	Charged multivesicular body protein 3.	0.751
ENSOMEP00000001140	chmp4b	ENSOMEP00000001140	ENSOMEP00000024970	Si:ch211-284f22.3.	Charged multivesicular body protein 4Bb.	0.627
ENSOMEP00000001140	chmp6	ENSOMEP00000001140	ENSOMEP00000014203	Si:ch211-284f22.3.	Charged multivesicular body protein 6.	0.664
ENSOMEP00000001140	hgs	ENSOMEP00000001140	ENSOMEP00000025611	Si:ch211-284f22.3.	Hepatocyte growth factor-regulated tyrosine kinase substrate.	0.569
ENSOMEP00000001140	snf8	ENSOMEP00000001140	ENSOMEP00000023446	Si:ch211-284f22.3.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.834