72 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nfe2l2	Nuclear factor, erythroid 2-like 2a. (607 aa)
	psma5	Proteasome subunit alpha type. (241 aa)
	LOC112146043	E1A binding protein p300 b. (2771 aa)
	psmc3	Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family. (427 aa)
	psmb1	Proteasome subunit beta. (237 aa)
	ENSOMEP00000004505	CREB binding protein a. (2295 aa)
	psmd13	Proteasome 26S subunit, non-ATPase 13. (378 aa)
	LOC112140153	Proteasome subunit beta. (275 aa)
	LOC112140152	Proteasome subunit beta. (275 aa)
	ENSOMEP00000019316	Proteasome 26S subunit, non-ATPase 3. (567 aa)
	LOC112150025	Proteasome subunit alpha type. (246 aa)
	ENSOMEP00000032192	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily. (427 aa)
	LOC112137399	Proteasome subunit beta. (272 aa)
	ENSOMEP00000020966	Ribosomal protein S27a. (183 aa)
	srxn1	Sulfiredoxin. (149 aa)
	NFE2L1	Nuclear factor, erythroid 2 like 1. (802 aa)
	psme2	Proteasome activator subunit 2. (243 aa)
	PSMD4	Proteasome 26S subunit, non-ATPase 4a. (372 aa)
	rbx1	Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
	cul1	Cullin 1b; Belongs to the cullin family. (777 aa)
	psmb2	Proteasome subunit beta. (199 aa)
	ENSOMEP00000025203	Proteasome 26S subunit, non-ATPase 4b. (367 aa)
	psma4	Proteasome subunit alpha type. (261 aa)
	psmd12	Proteasome 26S subunit, non-ATPase 12. (456 aa)
	ENSOMEP00000026888	Proteasome 26S subunit, non-ATPase 5. (475 aa)
	psmd7	Proteasome 26S subunit, non-ATPase 7. (324 aa)
	prdx1	Peroxiredoxin 1. (217 aa)
	ENSOMEP00000035400	Ubiquitin-like domain-containing protein. (137 aa)
	LOC112146289	Activating transcription factor 4b. (431 aa)
	ENSOMEP00000034008	Proteasome subunit beta 9a. (114 aa)
	kxd1	KxDL motif containing 1. (195 aa)
	crebbp	CREB binding protein b. (2411 aa)
	ENSOMEP00000027783	Proteasome subunit beta; Belongs to the peptidase T1B family. (225 aa)
	ENSOMEP00000027927	Ubiquitin-like domain-containing protein. (77 aa)
	ENSOMEP00000028219	Proteasome endopeptidase complex. (228 aa)
	ENSOMEP00000028860	Nuclear factor, erythroid 2-like 1a. (592 aa)
	psmc2	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family. (433 aa)
	psmb6	Proteasome subunit beta. (232 aa)
	ENSOMEP00000007070	VWFA domain-containing protein. (229 aa)
	LOC112144185	Proteasome subunit beta. (278 aa)
	gsk3b	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily. (421 aa)
	LOC112153984	E1A binding protein p300 a. (2690 aa)
	psmd6	Proteasome 26S subunit, non-ATPase 6. (389 aa)
	psmd8	Proteasome 26S subunit, non-ATPase 8. (265 aa)
	psmd9	Proteasome 26S subunit, non-ATPase 9. (212 aa)
	psma1	Proteasome subunit alpha type. (267 aa)
	skp1	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (163 aa)
	ENSOMEP00000002833	Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
	psmd11	Proteasome 26S subunit, non-ATPase 11b. (422 aa)
	psme3	Proteasome activator subunit 3. (256 aa)
	psmd1	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (961 aa)
	psmc5	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family. (406 aa)
	LOC112140154	Proteasome subunit beta 12. (217 aa)
	psmc4	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family. (417 aa)
	psma3	Proteasome subunit alpha type. (255 aa)
	psmd2	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family. (906 aa)
	LOC112137393	Proteasome subunit beta. (275 aa)
	LOC112137408	Proteasome subunit beta 12. (217 aa)
	psme1	Proteasome activator subunit 1. (261 aa)
	psmd10	Proteasome 26S subunit, non-ATPase 10. (226 aa)
	ENSOMEP00000012830	Proteasome subunit alpha type. (292 aa)
	psmc1	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family. (440 aa)
	LOC112147624	Proteasome subunit beta. (271 aa)
	psmf1	Proteasome inhibitor subunit 1. (313 aa)
	psmb3	Proteasome subunit beta. (206 aa)
	psmd14	Proteasome 26S subunit, non-ATPase 14. (310 aa)
	psmc6	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family. (389 aa)
	LOC112143678	Glycogen synthase kinase 3 alpha b; Belongs to the protein kinase superfamily. (440 aa)
	atf4	Activating transcription factor 4a. (439 aa)
	LOC112136178	Proteasome subunit beta. (216 aa)
	psma2	Proteasome subunit alpha type. (234 aa)
	psmb7	Proteasome subunit beta. (307 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000002833	ENSOMEP00000004505	ENSOMEP00000002833	ENSOMEP00000004505	Ubiquitin A-52 residue ribosomal protein fusion product 1.	CREB binding protein a.	0.610
ENSOMEP00000002833	ENSOMEP00000007070	ENSOMEP00000002833	ENSOMEP00000007070	Ubiquitin A-52 residue ribosomal protein fusion product 1.	VWFA domain-containing protein.	0.959
ENSOMEP00000002833	ENSOMEP00000012830	ENSOMEP00000002833	ENSOMEP00000012830	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit alpha type.	0.951
ENSOMEP00000002833	ENSOMEP00000019316	ENSOMEP00000002833	ENSOMEP00000019316	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome 26S subunit, non-ATPase 3.	0.970
ENSOMEP00000002833	ENSOMEP00000020966	ENSOMEP00000002833	ENSOMEP00000020966	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.999
ENSOMEP00000002833	ENSOMEP00000025203	ENSOMEP00000002833	ENSOMEP00000025203	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome 26S subunit, non-ATPase 4b.	0.959
ENSOMEP00000002833	ENSOMEP00000026888	ENSOMEP00000002833	ENSOMEP00000026888	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome 26S subunit, non-ATPase 5.	0.678
ENSOMEP00000002833	ENSOMEP00000027783	ENSOMEP00000002833	ENSOMEP00000027783	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.974
ENSOMEP00000002833	ENSOMEP00000027927	ENSOMEP00000002833	ENSOMEP00000027927	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like domain-containing protein.	0.989
ENSOMEP00000002833	ENSOMEP00000028219	ENSOMEP00000002833	ENSOMEP00000028219	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome endopeptidase complex.	0.951
ENSOMEP00000002833	ENSOMEP00000032192	ENSOMEP00000002833	ENSOMEP00000032192	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.695
ENSOMEP00000002833	ENSOMEP00000034008	ENSOMEP00000002833	ENSOMEP00000034008	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta 9a.	0.889
ENSOMEP00000002833	ENSOMEP00000035400	ENSOMEP00000002833	ENSOMEP00000035400	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like domain-containing protein.	0.999
ENSOMEP00000002833	LOC112136178	ENSOMEP00000002833	ENSOMEP00000015483	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta.	0.889
ENSOMEP00000002833	LOC112137393	ENSOMEP00000002833	ENSOMEP00000031971	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta.	0.914
ENSOMEP00000002833	LOC112137399	ENSOMEP00000002833	ENSOMEP00000031974	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta.	0.931
ENSOMEP00000002833	LOC112137408	ENSOMEP00000002833	ENSOMEP00000031958	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta 12.	0.889
ENSOMEP00000002833	LOC112140152	ENSOMEP00000002833	ENSOMEP00000018593	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta.	0.914
ENSOMEP00000002833	LOC112140153	ENSOMEP00000002833	ENSOMEP00000018565	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta.	0.931
ENSOMEP00000002833	LOC112140154	ENSOMEP00000002833	ENSOMEP00000034000	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Proteasome subunit beta 12.	0.889