46 items (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC112146019	Elongin B. (150 aa)
	ENSOMEP00000035400	Ubiquitin-like domain-containing protein. (137 aa)
	ENSOMEP00000034855	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (436 aa)
	tmub2	Transmembrane and ubiquitin-like domain containing 2. (330 aa)
	ENSOMEP00000033688	BCL2 associated athanogene 6. (1179 aa)
	ENSOMEP00000033039	Small ubiquitin-related modifier. (76 aa)
	yod1	YOD1 deubiquitinase. (300 aa)
	LOC112155766	NEDD8 ubiquitin like modifier. (80 aa)
	ubl7	Ubiquitin-like 7b (bone marrow stromal cell-derived). (377 aa)
	ENSOMEP00000030101	Ubiquitin-like domain-containing protein. (141 aa)
	ENSOMEP00000030054	Ubiquitin-like domain-containing protein. (114 aa)
	sumo2	Small ubiquitin-related modifier. (115 aa)
	LOC112155690	Small ubiquitin like modifier 3b. (137 aa)
	sf3a1	Splicing factor 3a, subunit 1. (784 aa)
	ENSOMEP00000029448	NEDD8 ubiquitin like modifier. (94 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	ENSOMEP00000028097	Uncharacterized protein. (393 aa)
	ENSOMEP00000027927	Ubiquitin-like domain-containing protein. (77 aa)
	ubtd1	Ubiquitin domain containing 1b. (237 aa)
	ubtd2	Ubiquitin domain containing 2. (272 aa)
	ENSOMEP00000022846	Ubiquitin-like domain-containing protein. (235 aa)
	LOC112148036	ISG15 ubiquitin like modifier. (168 aa)
	ubfd1	Ubiquitin family domain containing 1. (293 aa)
	ubqln1	Uncharacterized protein. (397 aa)
	ENSOMEP00000020966	Ribosomal protein S27a. (183 aa)
	tmub1	Transmembrane and ubiquitin-like domain containing 1. (270 aa)
	ELOB	Elongin B. (119 aa)
	ENSOMEP00000019380	F-box protein 7. (413 aa)
	ENSOMEP00000019169	Ubiquitin-like domain-containing protein. (75 aa)
	uhrf1	Ubiquitin-like with PHD and ring finger domains 1. (776 aa)
	ENSOMEP00000016531	Ubiquitin-like domain-containing protein. (201 aa)
	sacs	Sacsin molecular chaperone. (4588 aa)
	LOC112141169	Homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1. (397 aa)
	LOC112136981	Midnolin. (536 aa)
	LOC112156226	Ubiquitin-like domain-containing protein. (95 aa)
	bag1	BCL2 associated athanogene 1. (207 aa)
	ENSOMEP00000007848	Ubiquitin-like domain-containing protein. (116 aa)
	RAD23B	RAD23 homolog B, nucleotide excision repair protein. (395 aa)
	usp14	Ubiquitin carboxyl-terminal hydrolase. (491 aa)
	LOC112162685	Ubiquitin-like domain-containing protein. (379 aa)
	ublcp1	Ubiquitin-like domain containing CTD phosphatase 1. (318 aa)
	LOC112136675	HERPUD family member 2. (430 aa)
	zfand4	Zinc finger, AN1-type domain 4. (724 aa)
	ENSOMEP00000002833	Ubiquitin A-52 residue ribosomal protein fusion product 1. (129 aa)
	UHRF2	Ubiquitin like with PHD and ring finger domains 2. (906 aa)
	ddi2	DNA-damage inducible protein 2. (786 aa)

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOB	ENSOMEP00000002833	ENSOMEP00000019925	ENSOMEP00000002833	Elongin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.705
ELOB	ENSOMEP00000019169	ENSOMEP00000019925	ENSOMEP00000019169	Elongin B.	Ubiquitin-like domain-containing protein.	0.602
ELOB	ENSOMEP00000020966	ENSOMEP00000019925	ENSOMEP00000020966	Elongin B.	Ribosomal protein S27a.	0.775
ELOB	ENSOMEP00000027927	ENSOMEP00000019925	ENSOMEP00000027927	Elongin B.	Ubiquitin-like domain-containing protein.	0.758
ELOB	ENSOMEP00000028097	ENSOMEP00000019925	ENSOMEP00000028097	Elongin B.	Uncharacterized protein.	0.562
ELOB	ENSOMEP00000029448	ENSOMEP00000019925	ENSOMEP00000029448	Elongin B.	NEDD8 ubiquitin like modifier.	0.933
ELOB	ENSOMEP00000030054	ENSOMEP00000019925	ENSOMEP00000030054	Elongin B.	Ubiquitin-like domain-containing protein.	0.602
ELOB	ENSOMEP00000030101	ENSOMEP00000019925	ENSOMEP00000030101	Elongin B.	Ubiquitin-like domain-containing protein.	0.602
ELOB	ENSOMEP00000035400	ENSOMEP00000019925	ENSOMEP00000035400	Elongin B.	Ubiquitin-like domain-containing protein.	0.776
ELOB	LOC112146019	ENSOMEP00000019925	ENSOMEP00000017706	Elongin B.	Elongin B.	0.926
ELOB	LOC112148036	ENSOMEP00000019925	ENSOMEP00000022628	Elongin B.	ISG15 ubiquitin like modifier.	0.602
ELOB	LOC112155766	ENSOMEP00000019925	ENSOMEP00000030779	Elongin B.	NEDD8 ubiquitin like modifier.	0.933
ELOB	LOC112156226	ENSOMEP00000019925	ENSOMEP00000012841	Elongin B.	Ubiquitin-like domain-containing protein.	0.602
ELOB	RAD23B	ENSOMEP00000019925	ENSOMEP00000007321	Elongin B.	RAD23 homolog B, nucleotide excision repair protein.	0.562
ELOB	fau	ENSOMEP00000019925	ENSOMEP00000028165	Elongin B.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.652
ELOB	ubl7	ENSOMEP00000019925	ENSOMEP00000030500	Elongin B.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.578
ELOB	ublcp1	ENSOMEP00000019925	ENSOMEP00000006299	Elongin B.	Ubiquitin-like domain containing CTD phosphatase 1.	0.443
ELOB	ubqln1	ENSOMEP00000019925	ENSOMEP00000021616	Elongin B.	Uncharacterized protein.	0.563
ELOB	zfand4	ENSOMEP00000019925	ENSOMEP00000002845	Elongin B.	Zinc finger, AN1-type domain 4.	0.602
ENSOMEP00000002833	ELOB	ENSOMEP00000002833	ENSOMEP00000019925	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Elongin B.	0.705