(38 nodes) Ribosomal protein S5 domain 2-type fold network (Auxenochlorella protothecoides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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gene fusions

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co-expression

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Your Input:
	F751_2832	Exosome complex component MTR3. (262 aa)
	F751_3018	Lon protease 2; Belongs to the peptidase S16 family. (579 aa)
	F751_0867	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (738 aa)
	F751_3945	Elongation factor 2. (1092 aa)
	F751_6095	DNA mismatch repair protein Mlh1. (650 aa)
	F751_2399	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (701 aa)
	F751_2382	Polyribonucleotide nucleotidyltransferase. (661 aa)
	F751_2326	Exosome complex component RRP45. (509 aa)
	F751_2311	Protein IMPACT. (239 aa)
	F751_3152	DNA repair protein RadA-like protein. (450 aa)
	F751_3125	Mismatch repair endonuclease PMS2. (598 aa)
	F751_0246	Exosome complex component RRP43. (276 aa)
	F751_4043	Heat shock protein 83-1. (885 aa)
	F751_4029	Galactokinase. (498 aa)
	F751_0365	Exosome complex component RRP42. (578 aa)
	F751_5569	116 kDa U5 small nuclear ribonucleoprotein component. (808 aa)
	F751_5552	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1000 aa)
	Rps9	30S ribosomal protein S9, chloroplastic. (124 aa)
	F751_1302	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1299 aa)
	F751_5187	Homoserine kinase. (268 aa)
	F751_5784	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic. (310 aa)
	F751_5774	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (714 aa)
	F751_1662	Glucuronokinase 1. (359 aa)
	F751_1576	30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (474 aa)
	F751_4459	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (237 aa)
	F751_4629	Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family. (208 aa)
	F751_1162	30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family. (207 aa)
	F751_5447	Exosome complex component RRP41. (246 aa)
	F751_3274	Endoplasmin-like protein. (1046 aa)
	F751_6368	Galactokinase. (405 aa)
	F751_0313	L-arabinokinase. (512 aa)
	TOP6B	DNA topoisomerase 6 subunit B; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP; Belongs to the TOP6B family. (693 aa)
	F751_5225	Polyribonucleotide nucleotidyltransferase. (532 aa)
	F751_2627	Putative UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2. (445 aa)
	F751_1452	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (673 aa)
	F751_6190	Elongation factor 2. (910 aa)
	F751_2099	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (141 aa)
	F751_2447	Heat shock protein 90-2. (432 aa)

Your Current Organism:

Auxenochlorella protothecoides

NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F751_0246	F751_0365	A0A087SEA8	A0A087SBA3	Exosome complex component RRP43.	Exosome complex component RRP42.	0.996
F751_0246	F751_2326	A0A087SEA8	A0A087SFV4	Exosome complex component RRP43.	Exosome complex component RRP45.	0.996
F751_0246	F751_2832	A0A087SEA8	A0A087SCW9	Exosome complex component RRP43.	Exosome complex component MTR3.	0.965
F751_0246	F751_5447	A0A087SEA8	A0A087SQ78	Exosome complex component RRP43.	Exosome complex component RRP41.	0.990
F751_0313	F751_4029	A0A087SS68	A0A087SE50	L-arabinokinase.	Galactokinase.	0.467
F751_0365	F751_0246	A0A087SBA3	A0A087SEA8	Exosome complex component RRP42.	Exosome complex component RRP43.	0.996
F751_0365	F751_1162	A0A087SBA3	A0A087SNT1	Exosome complex component RRP42.	30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family.	0.511
F751_0365	F751_1576	A0A087SBA3	A0A087STZ6	Exosome complex component RRP42.	30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.478
F751_0365	F751_2099	A0A087SBA3	A0A087SLA8	Exosome complex component RRP42.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.515
F751_0365	F751_2326	A0A087SBA3	A0A087SFV4	Exosome complex component RRP42.	Exosome complex component RRP45.	0.996
F751_0365	F751_2832	A0A087SBA3	A0A087SCW9	Exosome complex component RRP42.	Exosome complex component MTR3.	0.969
F751_0365	F751_4459	A0A087SBA3	A0A087SN85	Exosome complex component RRP42.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.511
F751_0365	F751_5447	A0A087SBA3	A0A087SQ78	Exosome complex component RRP42.	Exosome complex component RRP41.	0.990
F751_0867	F751_1162	A0A087SHX5	A0A087SNT1	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family.	0.669
F751_0867	F751_1576	A0A087SHX5	A0A087STZ6	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.683
F751_0867	F751_2099	A0A087SHX5	A0A087SLA8	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.663
F751_0867	F751_2382	A0A087SHX5	A0A087SG11	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Polyribonucleotide nucleotidyltransferase.	0.498
F751_0867	F751_2399	A0A087SHX5	A0A087SG28	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.752
F751_0867	F751_4459	A0A087SHX5	A0A087SN85	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.789
F751_0867	F751_5225	A0A087SHX5	A0A087SQW0	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Polyribonucleotide nucleotidyltransferase.	0.498

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