(26 nodes) RNA Polymerase I Promoter Clearance network (Auxenochlorella protothecoides)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Your Input:
	F751_1096	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (131 aa)
	F751_4382	Cyclin-H1-1; Belongs to the cyclin family. (254 aa)
	F751_2861	DNA-directed RNA polymerases I and III subunit RPAC1. (333 aa)
	F751_6794	CDK-activating kinase assembly factor MAT1. (202 aa)
	F751_1253	DNA repair helicase XPB2. (785 aa)
	F751_4033	TATA-box-binding protein 2. (219 aa)
	F751_3199	DNA repair helicase UVH6. (782 aa)
	F751_2291	HMG box-containing protein C19G7.04. (165 aa)
	F751_1865	Uncharacterized protein. (634 aa)
	F751_1971	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (188 aa)
	F751_1984	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (397 aa)
	F751_6159	Histone H2B; Belongs to the histone H2B family. (123 aa)
	F751_1765	Histone H2B; Belongs to the histone H2B family. (123 aa)
	F751_6294	Putative RNA polymerase II transcription factor B subunit 1-1. (480 aa)
	F751_4959	Histone H2B; Belongs to the histone H2B family. (123 aa)
	F751_4561	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1693 aa)
	F751_4609	DNA-binding protein REB1. (381 aa)
	F751_6084	DNA-directed RNA polymerases I, II, and III subunit RPABC3; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (151 aa)
	F751_2750	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (59 aa)
	F751_5309	Uncharacterized protein. (99 aa)
	F751_3546	Uncharacterized protein. (327 aa)
	F751_4350	Putative DNA-directed RNA polymerase I subunit RPA2. (421 aa)
	F751_3708	DNA-directed RNA polymerase subunit 10-like protein. (74 aa)
	F751_6740	General transcription factor IIH subunit 2. (692 aa)
	F751_3318	Uncharacterized protein. (409 aa)
	F751_3455	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (110 aa)

Your Current Organism:

Auxenochlorella protothecoides

NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F751_1096	F751_1253	A0A087SCE6	A0A087SE18	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA repair helicase XPB2.	0.837
F751_1096	F751_1865	A0A087SCE6	A0A087SGY2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.983
F751_1096	F751_1971	A0A087SCE6	A0A087SH88	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.994
F751_1096	F751_1984	A0A087SCE6	A0A087SHA1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.823
F751_1096	F751_2750	A0A087SCE6	A0A087SPV5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.946
F751_1096	F751_2861	A0A087SCE6	A0A087SCZ8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.996
F751_1096	F751_3199	A0A087SCE6	A0A087SFH7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA repair helicase UVH6.	0.753
F751_1096	F751_3318	A0A087SCE6	A0A087SBM3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.946
F751_1096	F751_3455	A0A087SCE6	A0A087SC10	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.995
F751_1096	F751_3546	A0A087SCE6	A0A087SSL2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.997
F751_1096	F751_3708	A0A087SCE6	A0A087STN7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit 10-like protein.	0.995
F751_1096	F751_4033	A0A087SCE6	A0A087SE54	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	TATA-box-binding protein 2.	0.868
F751_1096	F751_4350	A0A087SCE6	A0A087ST21	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Putative DNA-directed RNA polymerase I subunit RPA2.	0.995
F751_1096	F751_4382	A0A087SCE6	A0A087SCP6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Cyclin-H1-1; Belongs to the cyclin family.	0.744
F751_1096	F751_4561	A0A087SCE6	A0A087SNI7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
F751_1096	F751_4609	A0A087SCE6	A0A087SNN5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-binding protein REB1.	0.637
F751_1096	F751_5309	A0A087SCE6	A0A087SRP2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.691
F751_1096	F751_6084	A0A087SCE6	A0A087SP49	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.997
F751_1096	F751_6294	A0A087SCE6	A0A087SK89	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Putative RNA polymerase II transcription factor B subunit 1-1.	0.827
F751_1096	F751_6740	A0A087SCE6	A0A087SAF5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	General transcription factor IIH subunit 2.	0.829

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