STRINGSTRING
F751_0169 F751_0169 F751_0175 F751_0175 F751_6420 F751_6420 F751_0365 F751_0365 F751_0442 F751_0442 F751_0840 F751_0840 LSM5 LSM5 F751_2832 F751_2832 F751_0246 F751_0246 LSM4 LSM4 LSM3 LSM3 F751_2326 F751_2326 F751_2382 F751_2382 F751_2428 F751_2428 F751_1703 F751_1703 F751_1958 F751_1958 F751_1959 F751_1959 F751_0881 F751_0881 F751_5980 F751_5980 F751_0550 F751_0550 F751_0566 F751_0566 F751_0592 F751_0592 F751_2435 F751_2435 F751_2453 F751_2453 F751_2480 F751_2480 F751_2519 F751_2519 F751_3598 F751_3598 F751_4693 F751_4693 F751_4874 F751_4874 F751_2691 F751_2691 F751_2090 F751_2090 F751_2174 F751_2174 F751_2212 F751_2212 F751_6659 F751_6659 F751_2047 F751_2047 F751_4506 F751_4506 F751_4582 F751_4582 F751_4583 F751_4583 F751_5630 F751_5630 F751_2744 F751_2744 F751_5447 F751_5447 F751_5277 F751_5277 F751_5178 F751_5178 F751_5198 F751_5198 F751_5225 F751_5225 F751_3282 F751_3282 F751_0280 F751_0280 LSM1 LSM1 F751_3524 F751_3524 F751_6538 F751_6538 LSM8 LSM8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
F751_0169Enolase. (595 aa)
F751_0175Putative exosome complex component rrp40. (195 aa)
F751_6420CCR4-NOT transcription complex subunit 3. (462 aa)
F751_0365Exosome complex component RRP42. (578 aa)
F751_0442U6 snRNA-associated Sm-like protein LSm6. (122 aa)
F751_0840Putative CCR4-associated factor 1-like protein 7. (293 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (96 aa)
F751_2832Exosome complex component MTR3. (262 aa)
F751_0246Exosome complex component RRP43. (276 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (219 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
F751_2326Exosome complex component RRP45. (509 aa)
F751_2382Polyribonucleotide nucleotidyltransferase. (661 aa)
F751_2428RuBisCO large subunit-binding protein subunit beta, chloroplastic; Belongs to the chaperonin (HSP60) family. (529 aa)
F751_1703mRNA-decapping enzyme-like protein. (203 aa)
F751_1958Poly(A) RNA polymerase protein 2. (638 aa)
F751_1959Poly(A) RNA polymerase protein 2. (871 aa)
F751_0881Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
F751_5980General negative regulator of transcription subunit 1. (1264 aa)
F751_0550PAB-dependent poly(A)-specific ribonuclease subunit 2. (1380 aa)
F751_0566Putative ATP-dependent RNA helicase. (1669 aa)
F751_0592ABC transporter I family member 20. (250 aa)
F751_2435ABC transporter I family member 19. (294 aa)
F751_2453Carbon catabolite repressor protein 4-like protein 2. (558 aa)
F751_2480Helicase SKI2W. (1497 aa)
F751_2519WD repeat-containing protein 61. (286 aa)
F751_3598Exosome complex component CSL4. (189 aa)
F751_46935'-3' exoribonuclease 1. (1216 aa)
F751_4874mRNA decapping complex subunit 2. (332 aa)
F751_26916-phosphofructokinase 5, chloroplastic. (523 aa)
F751_2090Uncharacterized protein. (117 aa)
F751_2174Exosome component 10. (1135 aa)
F751_2212PAB-dependent poly(A)-specific ribonuclease subunit 3. (520 aa)
F751_6659U6 snRNA-associated Sm-like protein LSm7. (103 aa)
F751_2047Cell differentiation protein RCD1-like protein. (302 aa)
F751_4506Heat shock 70 kDa protein, mitochondrial; Belongs to the heat shock protein 70 family. (666 aa)
F751_4582Superkiller viralicidic activity 2-like 2. (1005 aa)
F751_4583Exosome complex component rrp4. (286 aa)
F751_5630PAP-associated domain-containing protein 5. (478 aa)
F751_2744Tetratricopeptide repeat protein 37. (1385 aa)
F751_5447Exosome complex component RRP41. (246 aa)
F751_5277Poly(A)-specific ribonuclease PARN. (454 aa)
F751_5178Chaperonin CPN60, mitochondrial; Belongs to the chaperonin (HSP60) family. (580 aa)
F751_5198Putative NOT transcription complex subunit VIP2. (353 aa)
F751_5225Polyribonucleotide nucleotidyltransferase. (532 aa)
F751_32826-phosphofructokinase 5, chloroplastic. (486 aa)
F751_02806-phosphofructokinase 5, chloroplastic. (455 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (133 aa)
F751_3524Superkiller viralicidic activity 2-like 2. (597 aa)
F751_6538CCR4-NOT transcription complex subunit 4. (587 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
Your Current Organism:
Auxenochlorella protothecoides
NCBI taxonomy Id: 3075
Other names: A. protothecoides, Auxenochlorella protothecoides (Krueger) Kalina & M.Puncoch., Chlorella protothecoides, Chlorella protothecoides Krueger, Chlorella protothecoides var. galactophila, Chlorella protothecoides var. galactophila Shihira & R.W.Krauss, SAG 211-7a
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