(5 nodes) Platelet sensitization by LDL, and Regulation of protein binding network (Aspergillus rambellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARAM_004489	Lysophospholipase. (814 aa)
	ARAM_006329	Protein kinase domain-containing protein. (832 aa)
	ARAM_001139	Protein kinase domain-containing protein. (687 aa)
	ARAM_006051	Protein kinase domain-containing protein. (620 aa)
	ARAM_000630	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (365 aa)

Your Current Organism:

Aspergillus rambellii

NCBI taxonomy Id: 308745
Other names: A. rambellii, ATCC 42001, CBS 101887, IBT 14580

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARAM_000630	ARAM_001139	A0A0F8WTL0	A0A0F8V5G0	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Protein kinase domain-containing protein.	0.510
ARAM_000630	ARAM_004489	A0A0F8WTL0	A0A0F8UCQ5	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Lysophospholipase.	0.982
ARAM_000630	ARAM_006051	A0A0F8WTL0	A0A0F8W933	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Protein kinase domain-containing protein.	0.896
ARAM_000630	ARAM_006329	A0A0F8WTL0	A0A0F8V406	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Protein kinase domain-containing protein.	0.517
ARAM_001139	ARAM_000630	A0A0F8V5G0	A0A0F8WTL0	Protein kinase domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.510
ARAM_001139	ARAM_004489	A0A0F8V5G0	A0A0F8UCQ5	Protein kinase domain-containing protein.	Lysophospholipase.	0.661
ARAM_004489	ARAM_000630	A0A0F8UCQ5	A0A0F8WTL0	Lysophospholipase.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.982
ARAM_004489	ARAM_001139	A0A0F8UCQ5	A0A0F8V5G0	Lysophospholipase.	Protein kinase domain-containing protein.	0.661
ARAM_004489	ARAM_006051	A0A0F8UCQ5	A0A0F8W933	Lysophospholipase.	Protein kinase domain-containing protein.	0.661
ARAM_004489	ARAM_006329	A0A0F8UCQ5	A0A0F8V406	Lysophospholipase.	Protein kinase domain-containing protein.	0.661
ARAM_006051	ARAM_000630	A0A0F8W933	A0A0F8WTL0	Protein kinase domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.896
ARAM_006051	ARAM_004489	A0A0F8W933	A0A0F8UCQ5	Protein kinase domain-containing protein.	Lysophospholipase.	0.661
ARAM_006329	ARAM_000630	A0A0F8V406	A0A0F8WTL0	Protein kinase domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.517
ARAM_006329	ARAM_004489	A0A0F8V406	A0A0F8UCQ5	Protein kinase domain-containing protein.	Lysophospholipase.	0.661