STRINGSTRING
ARAM_004070 ARAM_004070 ARAM_000545 ARAM_000545 ARAM_004966 ARAM_004966 ARAM_000838 ARAM_000838 ARAM_005671 ARAM_005671 ARAM_007688 ARAM_007688 ARAM_000083 ARAM_000083 ARAM_006844 ARAM_006844 ARAM_000074 ARAM_000074 ARAM_005836 ARAM_005836 ARAM_005454 ARAM_005454 ARAM_004804 ARAM_004804 ARAM_005453 ARAM_005453 ARAM_000649 ARAM_000649 ARAM_007037 ARAM_007037 ARAM_001784 ARAM_001784 ARAM_004183 ARAM_004183 ARAM_006176 ARAM_006176 ARAM_007132 ARAM_007132 ARAM_007183 ARAM_007183 ARAM_005089 ARAM_005089 ARAM_007156 ARAM_007156 ARAM_005284 ARAM_005284 ARAM_006944 ARAM_006944 ARAM_005466 ARAM_005466 ARAM_005255 ARAM_005255 ARAM_005261 ARAM_005261 ARAM_005433 ARAM_005433 ARAM_000186 ARAM_000186 ARAM_001280 ARAM_001280 ARAM_001281 ARAM_001281 ARAM_004635 ARAM_004635 ARAM_002491 ARAM_002491 ARAM_003028 ARAM_003028 ARAM_007371 ARAM_007371 ARAM_002859 ARAM_002859 ARAM_003296 ARAM_003296 ARAM_001808 ARAM_001808 ARAM_001781 ARAM_001781 ARAM_007134 ARAM_007134 ARAM_000497 ARAM_000497 ARAM_003160 ARAM_003160 ARAM_003050 ARAM_003050 ARAM_002954 ARAM_002954 ARAM_001142 ARAM_001142 ARAM_005057 ARAM_005057 ARAM_005081 ARAM_005081 ARAM_006018 ARAM_006018 ARAM_005662 ARAM_005662 ARAM_004589 ARAM_004589 ARAM_002634 ARAM_002634 ARAM_005695 ARAM_005695 ARAM_003906 ARAM_003906 ARAM_006884 ARAM_006884 ARAM_005652 ARAM_005652 ARAM_007241 ARAM_007241 ARAM_005143 ARAM_005143 ARAM_007250 ARAM_007250 ARAM_007681 ARAM_007681 ARAM_002377 ARAM_002377 ARAM_006666 ARAM_006666 ARAM_003795 ARAM_003795 ARAM_004646 ARAM_004646 ARAM_005705 ARAM_005705 ARAM_001997 ARAM_001997 ARAM_001610 ARAM_001610 ARAM_003566 ARAM_003566 ARAM_003545 ARAM_003545 ARAM_000710 ARAM_000710 ARAM_000725 ARAM_000725 ARAM_007133 ARAM_007133 ARAM_006194 ARAM_006194 ARAM_004788 ARAM_004788 ARAM_003007 ARAM_003007 ARAM_004294 ARAM_004294 ARAM_005904 ARAM_005904 ARAM_000825 ARAM_000825 ARAM_006586 ARAM_006586 ARAM_006733 ARAM_006733 GUF1 GUF1 ARAM_007523 ARAM_007523 ARAM_005249 ARAM_005249 ARAM_003029 ARAM_003029 ARAM_006741 ARAM_006741 ARAM_004520 ARAM_004520 ARAM_004903 ARAM_004903 ARAM_003014 ARAM_003014 ARAM_000479 ARAM_000479 ARAM_001228 ARAM_001228 ARAM_004100 ARAM_004100 ARAM_002879 ARAM_002879 ARAM_001428 ARAM_001428 ARAM_007321 ARAM_007321 ARAM_007370 ARAM_007370 ARAM_003330 ARAM_003330 ARAM_002360 ARAM_002360 ARAM_003773 ARAM_003773 ARAM_000480 ARAM_000480 ARAM_000305 ARAM_000305 ARAM_000390 ARAM_000390 ARAM_006614 ARAM_006614 ARAM_003390 ARAM_003390
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ARAM_004070RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (478 aa)
ARAM_000545Nitroreductase family protein. (232 aa)
ARAM_004966RNA polymerase II subunit 3. (338 aa)
ARAM_000838Putative TFIIH complex helicase Ssl2. (822 aa)
ARAM_005671Nitroreductase domain-containing protein. (259 aa)
ARAM_007688FCP1 homology domain-containing protein. (676 aa)
ARAM_000083DNA repair protein. (72 aa)
ARAM_006844SAP30_Sin3_bdg domain-containing protein. (234 aa)
ARAM_000074Uncharacterized protein. (324 aa)
ARAM_005836RTR1-type domain-containing protein. (320 aa)
ARAM_005454DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1683 aa)
ARAM_004804Uncharacterized protein. (430 aa)
ARAM_005453Helicase ATP-binding domain-containing protein. (791 aa)
ARAM_000649Helicase ATP-binding domain-containing protein. (1011 aa)
ARAM_007037Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1076 aa)
ARAM_001784CYCLIN domain-containing protein; Belongs to the cyclin family. (955 aa)
ARAM_004183Uncharacterized protein. (463 aa)
ARAM_006176B-block_TFIIIC domain-containing protein. (1916 aa)
ARAM_007132Acyl_transf_3 domain-containing protein. (468 aa)
ARAM_007183Uncharacterized protein. (1436 aa)
ARAM_005089Uncharacterized protein. (392 aa)
ARAM_007156TFIID_20kDa domain-containing protein. (590 aa)
ARAM_005284Transcription initiation protein. (442 aa)
ARAM_006944Transcription initiation factor IIF subunit alpha. (726 aa)
ARAM_005466Uncharacterized protein. (752 aa)
ARAM_005255DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1255 aa)
ARAM_005261DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (356 aa)
ARAM_005433Uncharacterized protein. (212 aa)
ARAM_000186Metallothionein-I gene transcription activator. (76 aa)
ARAM_001280Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
ARAM_001281Uncharacterized protein. (288 aa)
ARAM_004635Serine/threonine protein; Belongs to the protein kinase superfamily. (350 aa)
ARAM_002491Transcription factor iws-1. (422 aa)
ARAM_003028DNA-directed RNA polymerase I, II, and III subunit Rpb6. (159 aa)
ARAM_007371TAFII55_N domain-containing protein. (489 aa)
ARAM_002859Uncharacterized protein. (269 aa)
ARAM_003296Transcription factor TFIIIB complex subunit Brf1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (1239 aa)
ARAM_001808Putative DNA-directed RNA polymerase III subunit 22.9 kDa. (190 aa)
ARAM_001781TATA-box binding protein. (262 aa)
ARAM_007134S-adenosylmethionine decarboxylase proenzyme. (927 aa)
ARAM_000497Uncharacterized protein. (372 aa)
ARAM_003160DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1227 aa)
ARAM_003050RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (856 aa)
ARAM_002954Uncharacterized protein. (903 aa)
ARAM_001142RNA polymerase II transcription factor B subunit 3. (367 aa)
ARAM_005057Uncharacterized protein. (390 aa)
ARAM_005081DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1746 aa)
ARAM_006018Uncharacterized protein. (283 aa)
ARAM_005662Putative DNA-directed RNA polymerase I and III subunit Rpc40. (374 aa)
ARAM_004589Transcription initiation factor TFIID subunit. (747 aa)
ARAM_002634Uncharacterized protein. (211 aa)
ARAM_005695RNA_pol_L_2 domain-containing protein. (135 aa)
ARAM_003906CYCLIN domain-containing protein; Belongs to the cyclin family. (424 aa)
ARAM_006884Uncharacterized protein. (504 aa)
ARAM_005652Uncharacterized protein. (642 aa)
ARAM_007241Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (286 aa)
ARAM_005143FACT complex subunit spt16. (1020 aa)
ARAM_007250DNA-directed RNA polymerase III subunit RPC10. (96 aa)
ARAM_007681MYB DNA-binding domain protein. (301 aa)
ARAM_002377FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (576 aa)
ARAM_006666Uncharacterized protein. (703 aa)
ARAM_003795DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
ARAM_004646RNA polymerase III transcription factor TFIIIC subunit (Tfc4). (1074 aa)
ARAM_005705Trimethylguanosine synthase. (1086 aa)
ARAM_001997DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (142 aa)
ARAM_001610Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (120 aa)
ARAM_003566SANT domain-containing protein. (562 aa)
ARAM_003545Polymerase (RNA) II (DNA directed) polypeptide D. (148 aa)
ARAM_000710RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (636 aa)
ARAM_000725TFIIH basal transcription factor complex p47 subunit. (630 aa)
ARAM_007133TAFII28 domain-containing protein. (386 aa)
ARAM_006194Mitogen-activated protein. (424 aa)
ARAM_004788Uncharacterized protein. (1271 aa)
ARAM_003007Transcription initiation factor TFIID subunit 13. (297 aa)
ARAM_004294RNA polymerase I-specific transcription initiation factor RRN3 family protein. (713 aa)
ARAM_005904DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1195 aa)
ARAM_000825Protein kinase domain-containing protein. (1077 aa)
ARAM_006586DUF4211 domain-containing protein. (588 aa)
ARAM_006733Uncharacterized protein. (368 aa)
GUF1Translation factor GUF1, mitochondrial; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2041 aa)
ARAM_007523Uncharacterized protein. (236 aa)
ARAM_005249Uncharacterized protein. (388 aa)
ARAM_003029C2H2 transcription factor (TFIIIA). (575 aa)
ARAM_006741Uncharacterized protein. (621 aa)
ARAM_004520HTH TFE/IIEalpha-type domain-containing protein. (437 aa)
ARAM_004903RNA polymerase II transcription elongation factor Rtf1p. (607 aa)
ARAM_003014Uncharacterized protein. (257 aa)
ARAM_000479Uncharacterized protein. (555 aa)
ARAM_001228Uncharacterized protein. (239 aa)
ARAM_004100Uncharacterized protein. (420 aa)
ARAM_002879Transcription elongation factor S-II. (302 aa)
ARAM_001428DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
ARAM_007321CDC73_C domain-containing protein. (465 aa)
ARAM_007370Bromodomain associated domain protein. (215 aa)
ARAM_003330DNA-directed RNA polymerase II subunit RPB11. (155 aa)
ARAM_002360Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1423 aa)
ARAM_003773Uncharacterized protein. (468 aa)
ARAM_000480Uncharacterized protein. (169 aa)
ARAM_000305Putative CDK9. (547 aa)
ARAM_000390Putative cyclin; Belongs to the cyclin family. (415 aa)
ARAM_006614Uncharacterized protein. (641 aa)
ARAM_003390Uncharacterized protein. (422 aa)
Your Current Organism:
Aspergillus rambellii
NCBI taxonomy Id: 308745
Other names: A. rambellii, ATCC 42001, CBS 101887, IBT 14580
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