24 items (Aspergillus rambellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARAM_002454	Uncharacterized protein. (902 aa)
	ARAM_002793	Uncharacterized protein. (77 aa)
	ARAM_003005	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (647 aa)
	ARAM_005434	Nop domain-containing protein. (584 aa)
	ARAM_002657	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (116 aa)
	ARAM_000330	rRNA processing protein. (624 aa)
	ARAM_002720	U3 small nucleolar ribonucleoprotein. (299 aa)
	ARAM_006542	Uncharacterized protein. (929 aa)
	ARAM_001042	RNA helicase. (812 aa)
	ARAM_004894	WD_REPEATS_REGION domain-containing protein. (542 aa)
	ARAM_005444	Ribosome biogenesis protein. (1190 aa)
	ARAM_005873	Uncharacterized protein. (1816 aa)
	ARAM_000326	WD_REPEATS_REGION domain-containing protein. (977 aa)
	ARAM_002036	BP28CT domain-containing protein. (1804 aa)
	ARAM_001242	Uncharacterized protein. (495 aa)
	ARAM_002308	Ribosomal_L7Ae domain-containing protein. (225 aa)
	ARAM_004937	RNA helicase (Dbp); Belongs to the DEAD box helicase family. (581 aa)
	ARAM_004303	WD_REPEATS_REGION domain-containing protein. (946 aa)
	ARAM_003984	rRNA processing protein. (396 aa)
	ARAM_006224	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (200 aa)
	ARAM_002779	Pre-rRNA processing nucleolar protein. (500 aa)
	ARAM_003432	Bms1-type G domain-containing protein. (805 aa)
	ARAM_007493	S4 RNA-binding domain-containing protein. (188 aa)
	ARAM_006665	WD_REPEATS_REGION domain-containing protein. (941 aa)

Your Current Organism:

Aspergillus rambellii

NCBI taxonomy Id: 308745
Other names: A. rambellii, ATCC 42001, CBS 101887, IBT 14580

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARAM_000326	ARAM_000330	A0A0F8VC91	A0A0F8UMA1	WD_REPEATS_REGION domain-containing protein.	rRNA processing protein.	0.997
ARAM_000326	ARAM_001042	A0A0F8VC91	A0A0F8V0D5	WD_REPEATS_REGION domain-containing protein.	RNA helicase.	0.802
ARAM_000326	ARAM_001242	A0A0F8VC91	A0A0F8VUG5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.992
ARAM_000326	ARAM_002036	A0A0F8VC91	A0A0F8VRC5	WD_REPEATS_REGION domain-containing protein.	BP28CT domain-containing protein.	0.999
ARAM_000326	ARAM_002308	A0A0F8VC91	A0A0F8W6G5	WD_REPEATS_REGION domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.851
ARAM_000326	ARAM_002454	A0A0F8VC91	A0A0F8UA37	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.994
ARAM_000326	ARAM_002657	A0A0F8VC91	A0A0F8ULT7	WD_REPEATS_REGION domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.967
ARAM_000326	ARAM_002720	A0A0F8VC91	A0A0F8UMM0	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar ribonucleoprotein.	0.995
ARAM_000326	ARAM_002779	A0A0F8VC91	A0A0F8WYF7	WD_REPEATS_REGION domain-containing protein.	Pre-rRNA processing nucleolar protein.	0.994
ARAM_000326	ARAM_003005	A0A0F8VC91	A0A0F8UFT3	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.783
ARAM_000326	ARAM_003432	A0A0F8VC91	A0A0F8X2P9	WD_REPEATS_REGION domain-containing protein.	Bms1-type G domain-containing protein.	0.791
ARAM_000326	ARAM_003984	A0A0F8VC91	A0A0F8WUF3	WD_REPEATS_REGION domain-containing protein.	rRNA processing protein.	0.999
ARAM_000326	ARAM_004303	A0A0F8VC91	A0A0F8WM24	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
ARAM_000326	ARAM_004894	A0A0F8VC91	A0A0F8V5D6	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
ARAM_000326	ARAM_004937	A0A0F8VC91	A0A0F8WB49	WD_REPEATS_REGION domain-containing protein.	RNA helicase (Dbp); Belongs to the DEAD box helicase family.	0.493
ARAM_000326	ARAM_005434	A0A0F8VC91	A0A0F8UKC4	WD_REPEATS_REGION domain-containing protein.	Nop domain-containing protein.	0.998
ARAM_000326	ARAM_005444	A0A0F8VC91	A0A0F8V9Y8	WD_REPEATS_REGION domain-containing protein.	Ribosome biogenesis protein.	0.997
ARAM_000326	ARAM_005873	A0A0F8VC91	A0A0F8VBV3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.987
ARAM_000326	ARAM_006542	A0A0F8VC91	A0A0F8UN61	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.566
ARAM_000326	ARAM_006665	A0A0F8VC91	A0A0F8XV57	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996