(13 nodes) Positive regulation of protein kinase activity network (Aspergillus rambellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARAM_000390	Putative cyclin; Belongs to the cyclin family. (415 aa)
	ARAM_002996	Uncharacterized protein. (250 aa)
	ARAM_003425	Uncharacterized protein. (700 aa)
	ARAM_003435	DBF4-type domain-containing protein. (641 aa)
	ARAM_004874	60S acidic ribosomal protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (136 aa)
	ARAM_005520	WD-repeat protein. (1704 aa)
	ARAM_001142	RNA polymerase II transcription factor B subunit 3. (367 aa)
	ARAM_007367	Cell division control protein. (290 aa)
	ARAM_001268	TRAF-like signal transducer. (455 aa)
	ARAM_001843	Conidiophore development protein. (387 aa)
	ARAM_004182	Uncharacterized protein. (319 aa)
	ARAM_004940	DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation. (450 aa)
	ARAM_002264	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (114 aa)

Your Current Organism:

Aspergillus rambellii

NCBI taxonomy Id: 308745
Other names: A. rambellii, ATCC 42001, CBS 101887, IBT 14580

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARAM_000390	ARAM_001142	A0A0F8XTB4	A0A0F8V5K0	Putative cyclin; Belongs to the cyclin family.	RNA polymerase II transcription factor B subunit 3.	0.651
ARAM_001142	ARAM_000390	A0A0F8V5K0	A0A0F8XTB4	RNA polymerase II transcription factor B subunit 3.	Putative cyclin; Belongs to the cyclin family.	0.651
ARAM_001142	ARAM_003425	A0A0F8V5K0	A0A0F8XK66	RNA polymerase II transcription factor B subunit 3.	Uncharacterized protein.	0.651
ARAM_001843	ARAM_002996	A0A0F8UFN8	A0A0F8XSR5	Conidiophore development protein.	Uncharacterized protein.	0.450
ARAM_001843	ARAM_004182	A0A0F8UFN8	A0A0F8UAZ3	Conidiophore development protein.	Uncharacterized protein.	0.450
ARAM_002996	ARAM_001843	A0A0F8XSR5	A0A0F8UFN8	Uncharacterized protein.	Conidiophore development protein.	0.450
ARAM_002996	ARAM_007367	A0A0F8XSR5	A0A0F8UTD4	Uncharacterized protein.	Cell division control protein.	0.495
ARAM_003425	ARAM_001142	A0A0F8XK66	A0A0F8V5K0	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 3.	0.651
ARAM_004182	ARAM_001843	A0A0F8UAZ3	A0A0F8UFN8	Uncharacterized protein.	Conidiophore development protein.	0.450
ARAM_007367	ARAM_002996	A0A0F8UTD4	A0A0F8XSR5	Cell division control protein.	Uncharacterized protein.	0.495