(34 nodes) Positive regulation of mRNA catabolic process network (Aspergillus rambellii)

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Predicted Interactions

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Your Input:
	ARAM_000480	Uncharacterized protein. (169 aa)
	ARAM_001288	Topoisomerase II associated protein. (831 aa)
	ARAM_007201	RNase_PH domain-containing protein. (407 aa)
	ARAM_006209	Putative exosome complex exonuclease Rrp40. (273 aa)
	ARAM_000666	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family. (509 aa)
	ARAM_001771	Ccr4-Not transcription complex subunit (NOT1). (2343 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (662 aa)
	ARAM_007727	Putative transcription factor. (746 aa)
	ARAM_006533	Guanine nucleotide-binding protein. (316 aa)
	ARAM_004645	SAM domain protein. (616 aa)
	ARAM_007625	Exosome component 3'-5' exonuclease. (787 aa)
	ARAM_005129	Putative exosome complex subunit Rrp46. (249 aa)
	ARAM_003515	Uncharacterized protein. (286 aa)
	ARAM_001437	Putative mRNA decapping hydrolase. (327 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (175 aa)
	ARAM_000726	Pumilio-family RNA binding repeat protein. (831 aa)
	ARAM_006697	Putative exosome complex endonuclease 2. (324 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1165 aa)
	ARAM_006675	Uncharacterized protein. (601 aa)
	ARAM_007082	Uncharacterized protein. (531 aa)
	ARAM_007059	Tr-type G domain-containing protein. (635 aa)
	ARAM_002363	Exosome complex component rrp4. (385 aa)
	ARAM_004937	RNA helicase (Dbp); Belongs to the DEAD box helicase family. (581 aa)
	ARAM_007272	Uncharacterized protein. (275 aa)
	ARAM_003545	Polymerase (RNA) II (DNA directed) polypeptide D. (148 aa)
	ARAM_004962	3' exoribonuclease family protein. (376 aa)
	ARAM_004661	Putative CCR4-NOT core complex subunit Caf1. (489 aa)
	ARAM_001440	Uncharacterized protein. (1156 aa)
	ARAM_001344	Nudix hydrolase domain-containing protein. (818 aa)
	ARAM_007394	RNA-binding protein. (988 aa)
	ARAM_004121	Tr-type G domain-containing protein. (725 aa)
	ARAM_003324	Uncharacterized protein. (592 aa)
	ARAM_006342	Uncharacterized protein. (326 aa)
	ARAM_002199	PUM-HD domain-containing protein. (880 aa)

Your Current Organism:

Aspergillus rambellii

NCBI taxonomy Id: 308745
Other names: A. rambellii, ATCC 42001, CBS 101887, IBT 14580

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARAM_000480	ARAM_003545	A0A0F8XQQ0	A0A0F8WBZ1	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.999
ARAM_000666	ARAM_000726	A0A0F8U7Y5	A0A0F8UZ42	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Pumilio-family RNA binding repeat protein.	0.501
ARAM_000666	ARAM_001288	A0A0F8U7Y5	A0A0F8XUK0	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Topoisomerase II associated protein.	0.995
ARAM_000666	ARAM_001344	A0A0F8U7Y5	A0A0F8X2J7	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Nudix hydrolase domain-containing protein.	0.998
ARAM_000666	ARAM_001437	A0A0F8U7Y5	A0A0F8US43	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Putative mRNA decapping hydrolase.	0.435
ARAM_000666	ARAM_001771	A0A0F8U7Y5	A0A0F8U9T8	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Ccr4-Not transcription complex subunit (NOT1).	0.979
ARAM_000666	ARAM_002199	A0A0F8U7Y5	A0A0F8XQE0	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	PUM-HD domain-containing protein.	0.626
ARAM_000666	ARAM_003515	A0A0F8U7Y5	A0A0F8URM8	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.872
ARAM_000666	ARAM_004661	A0A0F8U7Y5	A0A0F8WUU1	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Putative CCR4-NOT core complex subunit Caf1.	0.975
ARAM_000666	ARAM_005129	A0A0F8U7Y5	A0A0F8UQC3	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Putative exosome complex subunit Rrp46.	0.447
ARAM_000666	ARAM_006342	A0A0F8U7Y5	A0A0F8XPK8	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.998
ARAM_000666	ARAM_006675	A0A0F8U7Y5	A0A0F8V5D4	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.942
ARAM_000666	ARAM_006697	A0A0F8U7Y5	A0A0F8V0N4	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Putative exosome complex endonuclease 2.	0.520
ARAM_000666	ARAM_007272	A0A0F8U7Y5	A0A0F8WB80	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.973
ARAM_000666	ARAM_007394	A0A0F8U7Y5	A0A0F8X5C2	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	RNA-binding protein.	0.662
ARAM_000666	ARAM_007727	A0A0F8U7Y5	A0A0F8UIB4	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	Putative transcription factor.	0.967
ARAM_000666	LSM1	A0A0F8U7Y5	A0A0F8UWA8	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.974
ARAM_000666	PAN2	A0A0F8U7Y5	A0A0F8V1Y6	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	0.463
ARAM_000666	PAN3	A0A0F8U7Y5	A0A0F8UE91	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]	0.610
ARAM_000726	ARAM_000666	A0A0F8UZ42	A0A0F8U7Y5	Pumilio-family RNA binding repeat protein.	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	0.501