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| | ARAM_004903 | RNA polymerase II transcription elongation factor Rtf1p. (607 aa) |
| | ARAM_000871 | Lactamase_B domain-containing protein. (855 aa) |
| | ARAM_004186 | DNA repair protein. (1346 aa) |
| | ARAM_006459 | Uncharacterized protein. (232 aa) |
| | ARAM_003298 | Crossover junction endonuclease mus81. (814 aa) |
| | ARAM_004270 | Uncharacterized protein. (279 aa) |
| | ARAM_006007 | zf-C2HE domain-containing protein. (267 aa) |
| | ARAM_005103 | Heterogeneous nuclear ribonucleoprotein. (554 aa) |
| | ARAM_007263 | tRNA(M5U54)methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (586 aa) |
| | ARAM_000164 | Mitotic control protein; Belongs to the RNR ribonuclease family. (1035 aa) |
| | ARAM_006755 | Putative ATP dependent RNA helicase (Dob1). (1088 aa) |
| | ARAM_003462 | Putative ribonuclease P complex subunit Pop2. (310 aa) |
| | ARAM_003501 | Eukaryotic translation initiation factor 2c. (896 aa) |
| | ARAM_001300 | Nuclease domain-containing protein. (1292 aa) |
| | ARAM_005507 | BZIP domain-containing protein. (1863 aa) |
| | ARAM_001428 | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa) |
| | ARAM_001976 | Uncharacterized protein; Belongs to the DEAD box helicase family. (490 aa) |
| | ARAM_000121 | Endo/exonuclease/phosphatase domain-containing protein. (606 aa) |
| | ARAM_003142 | Fcf2 domain-containing protein. (197 aa) |
| | ARAM_001031 | UV-damage endonuclease. (700 aa) |
| | ARAM_006342 | Uncharacterized protein. (326 aa) |
| | ARAM_005116 | Uncharacterized protein. (561 aa) |
| | ARAM_007390 | Uncharacterized protein. (637 aa) |
| | ARAM_004260 | Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (793 aa) |
| | ARAM_005399 | 40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (88 aa) |
| | ARAM_000440 | Exosome complex subunit Csl4. (245 aa) |
| | ARAM_007201 | RNase_PH domain-containing protein. (407 aa) |
| | ARAM_007458 | 3'-5' exonuclease domain-containing protein. (356 aa) |
| | ARAM_000934 | Uncharacterized protein. (961 aa) |
| | ARAM_000891 | Putative polyadenylation factor subunit CstF64. (294 aa) |
| | ARAM_005525 | Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1477 aa) |
| | ARAM_000838 | Putative TFIIH complex helicase Ssl2. (822 aa) |
| | ARAM_000850 | 5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1408 aa) |
| | ARAM_001664 | KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (338 aa) |
| | ARAM_007452 | Uncharacterized protein. (714 aa) |
| | ARAM_006844 | SAP30_Sin3_bdg domain-containing protein. (234 aa) |
| | ARAM_005453 | Helicase ATP-binding domain-containing protein. (791 aa) |
| | ARAM_006209 | Putative exosome complex exonuclease Rrp40. (273 aa) |
| | ARAM_002794 | tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...] (469 aa) |
| | ARAM_000735 | RNase III domain-containing protein. (332 aa) |
| | ARAM_000509 | Uncharacterized protein. (844 aa) |
| | ARAM_006901 | Uncharacterized protein. (225 aa) |
| | ARAM_001860 | Exonuclease domain-containing protein. (649 aa) |
| | ARAM_006654 | Uncharacterized protein. (279 aa) |
| | ARAM_004188 | DNA repair protein. (77 aa) |
| | ARAM_004187 | Uncharacterized protein. (388 aa) |
| | ARAM_001215 | Ribosome biogenesis protein. (363 aa) |
| | ARAM_004298 | rRNA processing protein. (331 aa) |
| | ARAM_007727 | Putative transcription factor. (746 aa) |
| | ARAM_004053 | SAP domain-containing protein. (418 aa) |
| | ARAM_005434 | Nop domain-containing protein. (584 aa) |
| | ARAM_004583 | Putative mRNA cleavage and polyadenylation specificity factor complex subunit. (255 aa) |
| | ARAM_004036 | Mitochondrial 54S ribosomal protein. (381 aa) |
| | ARAM_004649 | Serine/threonine-protein phosphatase. (282 aa) |
| | ARAM_000330 | rRNA processing protein. (624 aa) |
| | ARAM_004855 | Ribonuclease T2; Belongs to the RNase T2 family. (263 aa) |
| | ARAM_001387 | Uncharacterized protein. (512 aa) |
| | USB1 | U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (457 aa) |
| | ARAM_005804 | RNase_PH domain-containing protein. (276 aa) |
| | ARAM_004671 | Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1414 aa) |
| | ARAM_005697 | Uncharacterized protein. (362 aa) |
| | ARAM_007625 | Exosome component 3'-5' exonuclease. (787 aa) |
| | ARAM_005129 | Putative exosome complex subunit Rrp46. (249 aa) |
| | ARAM_002000 | Ribonuclease P protein subunit. (305 aa) |
| | ARAM_003515 | Uncharacterized protein. (286 aa) |
| | ARAM_006661 | DNA repair protein. (1001 aa) |
| | ARAM_000841 | Nudix hydrolase domain-containing protein. (386 aa) |
| | ARAM_004218 | CID domain-containing protein. (640 aa) |
| | ARAM_005511 | Uncharacterized protein. (234 aa) |
| | ARAM_006421 | Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (279 aa) |
| | ARAM_000773 | Uncharacterized protein. (374 aa) |
| | ARAM_005545 | Uncharacterized protein. (824 aa) |
| | ARAM_006416 | Ribosome biogenesis protein. (594 aa) |
| | ARAM_002850 | Uncharacterized protein. (88 aa) |
| | ARAM_003433 | WD_REPEATS_REGION domain-containing protein. (534 aa) |
| | ARAM_005367 | TNase-like domain-containing protein. (303 aa) |
| | ARAM_006438 | Uncharacterized protein. (763 aa) |
| | ARAM_001967 | Uncharacterized protein. (628 aa) |
| | ARAM_000111 | Uncharacterized protein. (248 aa) |
| | ARAM_006832 | Uncharacterized protein. (198 aa) |
| | ARAM_006400 | XPG_I_2 domain-containing protein. (633 aa) |
| | ARAM_000690 | Deoxyribonuclease Tat-D. (324 aa) |
| | ARAM_006697 | Putative exosome complex endonuclease 2. (324 aa) |
| | ARAM_005206 | Uncharacterized protein. (404 aa) |
| | ARAM_002195 | Uncharacterized protein. (636 aa) |
| | PAN2 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1165 aa) |
| | ARAM_000478 | Piwi domain-containing protein. (1069 aa) |
| | FEN1 | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (395 aa) |
| | ARAM_006461 | Uncharacterized protein. (957 aa) |
| | SLX1 | Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (406 aa) |
| | ARAM_003840 | Uncharacterized protein. (1091 aa) |
| | ARAM_004694 | 5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1029 aa) |
| | ARAM_000385 | Uncharacterized protein. (1491 aa) |
| | ARAM_000376 | Putative ribonuclease H. (403 aa) |
| | ARAM_002368 | Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (820 aa) |
| | ARAM_007082 | Uncharacterized protein. (531 aa) |
| | ARAM_001283 | Uncharacterized protein. (783 aa) |
| | ARAM_004388 | Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (357 aa) |
| | ARAM_001405 | DNA polymerase. (1100 aa) |
| | ARAM_004781 | Putative cleavage and polyadenylation specifity factor, 73 kDa subunit. (874 aa) |
| | ARAM_001643 | rRNA-processing protein. (190 aa) |
| | ARAM_005444 | Ribosome biogenesis protein. (1190 aa) |
| | ARAM_004366 | Uncharacterized protein. (520 aa) |
| | ARAM_005873 | Uncharacterized protein. (1816 aa) |
| | ARAM_000168 | Uncharacterized protein. (388 aa) |
| | ARAM_000167 | Uncharacterized protein. (1655 aa) |
| | ARAM_000326 | WD_REPEATS_REGION domain-containing protein. (977 aa) |
| | ARAM_003825 | DNA repair protein. (370 aa) |
| | ARAM_005091 | Uncharacterized protein. (276 aa) |
| | ARAM_005222 | KH domain-containing protein. (258 aa) |
| | ARAM_002891 | Uncharacterized protein; Belongs to the RNase T2 family. (439 aa) |
| | ARAM_005894 | Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (350 aa) |
| | ARAM_002150 | XPGI domain-containing protein. (761 aa) |
| | ARAM_002363 | Exosome complex component rrp4. (385 aa) |
| | ARAM_007389 | Small nucleolar ribonucleoprotein. (902 aa) |
| | ARAM_007250 | DNA-directed RNA polymerase III subunit RPC10. (96 aa) |
| | ARAM_003847 | Uncharacterized protein. (149 aa) |
| | ARAM_000492 | Ribosome biogenesis protein. (551 aa) |
| | ARAM_000247 | Uncharacterized protein. (1170 aa) |
| | ARAM_001242 | Uncharacterized protein. (495 aa) |
| | ARAM_002341 | DBR1 domain-containing protein. (716 aa) |
| | ARAM_002620 | Deoxyribonuclease Tat-D. (315 aa) |
| | ARAM_003795 | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa) |
| | ARAM_004999 | Putative ribonuclease P complex subunit Pop1. (901 aa) |
| | ARAM_002333 | Uncharacterized protein. (218 aa) |
| | ARAM_003126 | RAI1 domain-containing protein. (378 aa) |
| | ARAM_002308 | Ribosomal_L7Ae domain-containing protein. (225 aa) |
| | ARAM_005377 | POLAc domain-containing protein. (1129 aa) |
| | ARAM_002792 | 20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (431 aa) |
| | ARAM_001795 | mRNA cleavage and polyadenylation specificity factor complex subunit. (763 aa) |
| | ARAM_005171 | RNase III domain-containing protein. (266 aa) |
| | ARAM_003234 | Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (220 aa) |
| | ARAM_004031 | Cell wall biogenesis protein. (1381 aa) |
| | ARAM_001214 | F-box domain protein. (358 aa) |
| | ARAM_004303 | WD_REPEATS_REGION domain-containing protein. (946 aa) |
| | ARAM_001867 | NACHT domain-containing protein. (1326 aa) |
| | ARAM_004962 | 3' exoribonuclease family protein. (376 aa) |
| | ARAM_001999 | tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...] (309 aa) |
| | ARAM_001979 | Uncharacterized protein. (1118 aa) |
| | ARAM_006029 | RNase H domain-containing protein. (170 aa) |
| | NTH1 | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (419 aa) |
| | ARAM_003213 | RNB domain-containing protein. (1017 aa) |
| | ARAM_005298 | Endonuclease. (335 aa) |
| | ARAM_004317 | Calcium/calmodulin dependent protein. (130 aa) |
| | ARAM_003981 | Cleavage and polyadenylation specificity factor subunit 2. (1012 aa) |
| | ARAM_004661 | Putative CCR4-NOT core complex subunit Caf1. (489 aa) |
| | ARAM_002800 | TP6A_N domain-containing protein. (383 aa) |
| | ARAM_001436 | Exonuclease domain-containing protein. (942 aa) |
| | ARAM_001765 | Uncharacterized protein. (439 aa) |
| | ARAM_002776 | DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2231 aa) |
| | ARAM_006561 | Putative exonuclease. (743 aa) |
| | ARAM_001344 | Nudix hydrolase domain-containing protein. (818 aa) |
| | ARAM_003432 | Bms1-type G domain-containing protein. (805 aa) |
| | ARAM_005152 | Uncharacterized protein. (308 aa) |
| | SLX4 | Structure-specific endonuclease subunit SLX4; Regulatory subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (827 aa) |
