23 items (Aspergillus rambellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARAM_006605	HAD_SAK_1 domain-containing protein. (589 aa)
	ARAM_003042	Ribonuclease p/mrp subunit. (363 aa)
	ARAM_001744	Uncharacterized protein. (378 aa)
	ARAM_002779	Pre-rRNA processing nucleolar protein. (500 aa)
	ARAM_006224	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (200 aa)
	ARAM_002308	Ribosomal_L7Ae domain-containing protein. (225 aa)
	ARAM_002333	Uncharacterized protein. (218 aa)
	ARAM_004999	Putative ribonuclease P complex subunit Pop1. (901 aa)
	ARAM_003041	NB-ARC domain-containing protein. (1100 aa)
	ARAM_005091	Uncharacterized protein. (276 aa)
	ARAM_000168	Uncharacterized protein. (388 aa)
	ARAM_001652	Uncharacterized protein. (1684 aa)
	ARAM_000289	PUA domain-containing protein. (779 aa)
	ARAM_006378	Uncharacterized protein. (149 aa)
	ARAM_005511	Uncharacterized protein. (234 aa)
	ARAM_002000	Ribonuclease P protein subunit. (305 aa)
	ARAM_002657	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (116 aa)
	ARAM_005434	Nop domain-containing protein. (584 aa)
	ARAM_000763	rRNA methyltransferase NOP1. (316 aa)
	ARAM_002793	Uncharacterized protein. (77 aa)
	ARAM_000904	DUF676 domain-containing protein. (986 aa)
	ARAM_003138	Uncharacterized protein. (208 aa)
	ARAM_006830	Uncharacterized protein. (295 aa)

Your Current Organism:

Aspergillus rambellii

NCBI taxonomy Id: 308745
Other names: A. rambellii, ATCC 42001, CBS 101887, IBT 14580

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARAM_000168	ARAM_002000	A0A0F8VC62	A0A0F8UR85	Uncharacterized protein.	Ribonuclease P protein subunit.	0.995
ARAM_000168	ARAM_002333	A0A0F8VC62	A0A0F8W3D2	Uncharacterized protein.	Uncharacterized protein.	0.994
ARAM_000168	ARAM_002657	A0A0F8VC62	A0A0F8ULT7	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.419
ARAM_000168	ARAM_003138	A0A0F8VC62	A0A0F8VPG3	Uncharacterized protein.	Uncharacterized protein.	0.937
ARAM_000168	ARAM_004999	A0A0F8VC62	A0A0F8W295	Uncharacterized protein.	Putative ribonuclease P complex subunit Pop1.	0.981
ARAM_000168	ARAM_005511	A0A0F8VC62	A0A0F8UT29	Uncharacterized protein.	Uncharacterized protein.	0.917
ARAM_000168	ARAM_006378	A0A0F8VC62	A0A0F8UUQ7	Uncharacterized protein.	Uncharacterized protein.	0.917
ARAM_000289	ARAM_000763	A0A0F8V4K2	A0A0F8UEN3	PUA domain-containing protein.	rRNA methyltransferase NOP1.	0.996
ARAM_000289	ARAM_001744	A0A0F8V4K2	A0A0F8X9C8	PUA domain-containing protein.	Uncharacterized protein.	0.412
ARAM_000289	ARAM_002308	A0A0F8V4K2	A0A0F8W6G5	PUA domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.999
ARAM_000289	ARAM_002657	A0A0F8V4K2	A0A0F8ULT7	PUA domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.980
ARAM_000289	ARAM_002779	A0A0F8V4K2	A0A0F8WYF7	PUA domain-containing protein.	Pre-rRNA processing nucleolar protein.	0.994
ARAM_000289	ARAM_002793	A0A0F8V4K2	A0A0F8U871	PUA domain-containing protein.	Uncharacterized protein.	0.997
ARAM_000289	ARAM_005434	A0A0F8V4K2	A0A0F8UKC4	PUA domain-containing protein.	Nop domain-containing protein.	0.992
ARAM_000289	ARAM_006224	A0A0F8V4K2	A0A0F8WWA5	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
ARAM_000763	ARAM_000289	A0A0F8UEN3	A0A0F8V4K2	rRNA methyltransferase NOP1.	PUA domain-containing protein.	0.996
ARAM_000763	ARAM_001744	A0A0F8UEN3	A0A0F8X9C8	rRNA methyltransferase NOP1.	Uncharacterized protein.	0.946
ARAM_000763	ARAM_002308	A0A0F8UEN3	A0A0F8W6G5	rRNA methyltransferase NOP1.	Ribosomal_L7Ae domain-containing protein.	0.995
ARAM_000763	ARAM_002657	A0A0F8UEN3	A0A0F8ULT7	rRNA methyltransferase NOP1.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
ARAM_000763	ARAM_002779	A0A0F8UEN3	A0A0F8WYF7	rRNA methyltransferase NOP1.	Pre-rRNA processing nucleolar protein.	0.999