(8 nodes) Zinc-binding ribosomal protein network (Aspergillus rambellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARAM_003520	60S ribosomal protein. (92 aa)
	ARAM_005058	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (336 aa)
	ARAM_001490	Mitochondrial 54S ribosomal protein. (60 aa)
	ARAM_002889	Ubiquitin-like domain-containing protein. (154 aa)
	ARAM_006477	Uncharacterized protein. (127 aa)
	ARAM_000415	40S ribosomal protein S27; Belongs to the eukaryotic ribosomal protein eS27 family. (479 aa)
	ARAM_007753	Ribosomal_S27 domain-containing protein. (82 aa)
	ARAM_000424	60S ribosomal protein. (586 aa)

Your Current Organism:

Aspergillus rambellii

NCBI taxonomy Id: 308745
Other names: A. rambellii, ATCC 42001, CBS 101887, IBT 14580

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARAM_001490	ARAM_006477	A0A0F8X5X9	A0A0F8WUY2	Mitochondrial 54S ribosomal protein.	Uncharacterized protein.	0.999
ARAM_002889	ARAM_003520	A0A0F8WWE7	A0A0F8U1N6	Ubiquitin-like domain-containing protein.	60S ribosomal protein.	0.962
ARAM_002889	ARAM_005058	A0A0F8WWE7	A0A0F8XCA8	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.865
ARAM_003520	ARAM_002889	A0A0F8U1N6	A0A0F8WWE7	60S ribosomal protein.	Ubiquitin-like domain-containing protein.	0.962
ARAM_003520	ARAM_005058	A0A0F8U1N6	A0A0F8XCA8	60S ribosomal protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.954
ARAM_003520	ARAM_007753	A0A0F8U1N6	A0A0F8UDB0	60S ribosomal protein.	Ribosomal_S27 domain-containing protein.	0.962
ARAM_005058	ARAM_002889	A0A0F8XCA8	A0A0F8WWE7	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	Ubiquitin-like domain-containing protein.	0.865
ARAM_005058	ARAM_003520	A0A0F8XCA8	A0A0F8U1N6	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	60S ribosomal protein.	0.954
ARAM_005058	ARAM_007753	A0A0F8XCA8	A0A0F8UDB0	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	Ribosomal_S27 domain-containing protein.	0.865
ARAM_006477	ARAM_001490	A0A0F8WUY2	A0A0F8X5X9	Uncharacterized protein.	Mitochondrial 54S ribosomal protein.	0.999
ARAM_007753	ARAM_003520	A0A0F8UDB0	A0A0F8U1N6	Ribosomal_S27 domain-containing protein.	60S ribosomal protein.	0.962
ARAM_007753	ARAM_005058	A0A0F8UDB0	A0A0F8XCA8	Ribosomal_S27 domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.865