(55 nodes) Basal transcription factors network (Aspergillus rambellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARAM_005284	Transcription initiation protein. (442 aa)
	ARAM_001930	Uncharacterized protein. (289 aa)
	ARAM_003261	Uncharacterized protein. (557 aa)
	ARAM_007370	Bromodomain associated domain protein. (215 aa)
	ARAM_003319	Epimerase domain-containing protein. (287 aa)
	ARAM_005260	Chromatin modification-related protein. (423 aa)
	ARAM_005184	Chromatin modification-related protein. (716 aa)
	ARAM_005865	Uncharacterized protein. (674 aa)
	ARAM_003014	Uncharacterized protein. (257 aa)
	ARAM_004520	HTH TFE/IIEalpha-type domain-containing protein. (437 aa)
	ARAM_001332	Putative transcription initiation factor subunit (TAF30). (235 aa)
	ARAM_007656	DOC family protein. (128 aa)
	ARAM_006733	Uncharacterized protein. (368 aa)
	ARAM_006586	DUF4211 domain-containing protein. (588 aa)
	ARAM_003007	Transcription initiation factor TFIID subunit 13. (297 aa)
	ARAM_002922	RNA binding protein. (589 aa)
	ARAM_004788	Uncharacterized protein. (1271 aa)
	ARAM_007133	TAFII28 domain-containing protein. (386 aa)
	ARAM_000725	TFIIH basal transcription factor complex p47 subunit. (630 aa)
	ARAM_005705	Trimethylguanosine synthase. (1086 aa)
	ARAM_000679	HMG box domain-containing protein. (306 aa)
	ARAM_007241	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (286 aa)
	ARAM_005652	Uncharacterized protein. (642 aa)
	ARAM_003906	CYCLIN domain-containing protein; Belongs to the cyclin family. (424 aa)
	ARAM_006856	Urb2 domain-containing protein. (1489 aa)
	ARAM_005873	Uncharacterized protein. (1816 aa)
	ARAM_004589	Transcription initiation factor TFIID subunit. (747 aa)
	ARAM_001142	RNA polymerase II transcription factor B subunit 3. (367 aa)
	ARAM_005151	Uncharacterized protein. (679 aa)
	ARAM_003832	HNHc domain-containing protein. (242 aa)
	ARAM_000497	Uncharacterized protein. (372 aa)
	ARAM_007134	S-adenosylmethionine decarboxylase proenzyme. (927 aa)
	ARAM_001781	TATA-box binding protein. (262 aa)
	ARAM_007369	BRO1 domain-containing protein. (552 aa)
	ARAM_007371	TAFII55_N domain-containing protein. (489 aa)
	ARAM_006166	Uncharacterized protein. (493 aa)
	ARAM_005650	Chromatin modification-related protein. (597 aa)
	ARAM_004635	Serine/threonine protein; Belongs to the protein kinase superfamily. (350 aa)
	ARAM_001281	Uncharacterized protein. (288 aa)
	ARAM_001280	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
	ARAM_003219	Uncharacterized protein. (1493 aa)
	ARAM_006944	Transcription initiation factor IIF subunit alpha. (726 aa)
	ARAM_007156	TFIID_20kDa domain-containing protein. (590 aa)
	ARAM_005616	Uncharacterized protein. (348 aa)
	ARAM_005089	Uncharacterized protein. (392 aa)
	ARAM_001359	Uncharacterized protein. (386 aa)
	ARAM_002474	Zn(2)-C6 fungal-type domain-containing protein. (752 aa)
	ARAM_007132	Acyl_transf_3 domain-containing protein. (468 aa)
	ARAM_007528	Zn(2)-C6 fungal-type domain-containing protein. (315 aa)
	ARAM_005453	Helicase ATP-binding domain-containing protein. (791 aa)
	ARAM_000074	Uncharacterized protein. (324 aa)
	ARAM_000083	DNA repair protein. (72 aa)
	ARAM_000838	Putative TFIIH complex helicase Ssl2. (822 aa)
	ARAM_006104	Uncharacterized protein. (418 aa)
	ARAM_004070	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (478 aa)

Your Current Organism:

Aspergillus rambellii

NCBI taxonomy Id: 308745
Other names: A. rambellii, ATCC 42001, CBS 101887, IBT 14580

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARAM_000074	ARAM_000497	A0A0F8U496	A0A0F8V263	Uncharacterized protein.	Uncharacterized protein.	0.846
ARAM_000074	ARAM_000725	A0A0F8U496	A0A0F8WDW8	Uncharacterized protein.	TFIIH basal transcription factor complex p47 subunit.	0.545
ARAM_000074	ARAM_000838	A0A0F8U496	A0A0F8U1W7	Uncharacterized protein.	Putative TFIIH complex helicase Ssl2.	0.558
ARAM_000074	ARAM_001142	A0A0F8U496	A0A0F8V5K0	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 3.	0.553
ARAM_000074	ARAM_001280	A0A0F8U496	A0A0F8UNU8	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.850
ARAM_000074	ARAM_001281	A0A0F8U496	A0A0F8UP54	Uncharacterized protein.	Uncharacterized protein.	0.850
ARAM_000074	ARAM_001332	A0A0F8U496	A0A0F8X1K8	Uncharacterized protein.	Putative transcription initiation factor subunit (TAF30).	0.888
ARAM_000074	ARAM_001781	A0A0F8U496	A0A0F8UZX1	Uncharacterized protein.	TATA-box binding protein.	0.995
ARAM_000074	ARAM_003007	A0A0F8U496	A0A0F8WL17	Uncharacterized protein.	Transcription initiation factor TFIID subunit 13.	0.999
ARAM_000074	ARAM_003014	A0A0F8U496	A0A0F8X4E7	Uncharacterized protein.	Uncharacterized protein.	0.945
ARAM_000074	ARAM_003906	A0A0F8U496	A0A0F8VI38	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.553
ARAM_000074	ARAM_004070	A0A0F8U496	A0A0F8TWK6	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.553
ARAM_000074	ARAM_004520	A0A0F8U496	A0A0F8X3T5	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.837
ARAM_000074	ARAM_004589	A0A0F8U496	A0A0F8VBF6	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.999
ARAM_000074	ARAM_004635	A0A0F8U496	A0A0F8UPC9	Uncharacterized protein.	Serine/threonine protein; Belongs to the protein kinase superfamily.	0.834
ARAM_000074	ARAM_004788	A0A0F8U496	A0A0F8WI10	Uncharacterized protein.	Uncharacterized protein.	0.991
ARAM_000074	ARAM_005089	A0A0F8U496	A0A0F8UGH2	Uncharacterized protein.	Uncharacterized protein.	0.865
ARAM_000074	ARAM_005284	A0A0F8U496	A0A0F8UHU6	Uncharacterized protein.	Transcription initiation protein.	0.872
ARAM_000074	ARAM_005453	A0A0F8U496	A0A0F8U5D7	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.553
ARAM_000074	ARAM_005616	A0A0F8U496	A0A0F8UGW8	Uncharacterized protein.	Uncharacterized protein.	0.997