(7 nodes) Bacteriochlorophyll metabolic process network (Rhodovulum sp. MB263)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARC87559.1	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
	ARC87560.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	ARC90426.1	Bacteriochlorophyll/chlorophyll a synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	ARC90270.1	Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	ARC90271.1	Chlorophyllide a reductase subunit Y; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	ARC90272.1	Chlorophyllide a reductase iron protein subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifH/BchL/ChlL family. (334 aa)
	ARC90273.1	Chlorophyll synthesis pathway protein BchC; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)

Your Current Organism:

Rhodovulum sp. MB263

NCBI taxonomy Id: 308754
Other names: R. sp. MB263

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARC87559.1	ARC87560.1	B5V46_02425	B5V46_02430	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ARC87559.1	ARC90270.1	B5V46_02425	B5V46_17475	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
ARC87559.1	ARC90271.1	B5V46_02425	B5V46_17480	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyllide a reductase subunit Y; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
ARC87559.1	ARC90272.1	B5V46_02425	B5V46_17485	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyllide a reductase iron protein subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifH/BchL/ChlL family.	0.841
ARC87559.1	ARC90273.1	B5V46_02425	B5V46_17490	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyll synthesis pathway protein BchC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
ARC87559.1	ARC90426.1	B5V46_02425	B5V46_02435	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriochlorophyll/chlorophyll a synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARC87560.1	ARC87559.1	B5V46_02430	B5V46_02425	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ARC87560.1	ARC90270.1	B5V46_02430	B5V46_17475	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
ARC87560.1	ARC90271.1	B5V46_02430	B5V46_17480	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyllide a reductase subunit Y; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
ARC87560.1	ARC90272.1	B5V46_02430	B5V46_17485	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyllide a reductase iron protein subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifH/BchL/ChlL family.	0.851
ARC87560.1	ARC90273.1	B5V46_02430	B5V46_17490	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyll synthesis pathway protein BchC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
ARC87560.1	ARC90426.1	B5V46_02430	B5V46_02435	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriochlorophyll/chlorophyll a synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ARC90270.1	ARC87559.1	B5V46_17475	B5V46_02425	Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
ARC90270.1	ARC87560.1	B5V46_17475	B5V46_02430	Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
ARC90270.1	ARC90271.1	B5V46_17475	B5V46_17480	Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyllide a reductase subunit Y; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ARC90270.1	ARC90272.1	B5V46_17475	B5V46_17485	Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyllide a reductase iron protein subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifH/BchL/ChlL family.	0.999
ARC90270.1	ARC90273.1	B5V46_17475	B5V46_17490	Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chlorophyll synthesis pathway protein BchC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ARC90270.1	ARC90426.1	B5V46_17475	B5V46_02435	Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriochlorophyll/chlorophyll a synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
ARC90271.1	ARC87559.1	B5V46_17480	B5V46_02425	Chlorophyllide a reductase subunit Y; Derived by automated computational analysis using gene prediction method: Protein Homology.	Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
ARC90271.1	ARC87560.1	B5V46_17480	B5V46_02430	Chlorophyllide a reductase subunit Y; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869